Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 0.0e+00 1182.5 628 100.0
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 2.7e-139 500.0 442 55.2
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 3.5e-139 499.6 474 53.8
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 5.1e-138 495.7 473 52.6
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 1.6e-136 490.7 462 52.4
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 8.7e-130 468.4 515 47.8
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 2.8e-128 463.4 513 48.5
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 8.4e-125 451.8 437 51.7
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 8.4e-125 451.8 460 50.9
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 1.1e-124 451.4 461 50.5
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 9.3e-124 448.4 471 49.5
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 1.6e-123 447.6 470 49.1
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 1.6e-123 447.6 510 47.3
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 3.5e-123 446.4 469 48.0
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 4.6e-123 446.0 465 49.0
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 1.0e-122 444.9 470 49.4
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 2.3e-122 443.7 474 48.5
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 2.3e-122 443.7 470 48.3
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 3.9e-122 443.0 456 48.5
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 3.9e-122 443.0 466 49.1
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 5.1e-122 442.6 509 47.2
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 5.1e-122 442.6 470 49.1
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 5.1e-122 442.6 480 47.9
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 5.1e-122 442.6 456 49.3
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 6.7e-122 442.2 543 43.8
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 6.7e-122 442.2 466 48.7
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 1.1e-121 441.4 475 48.0
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 1.1e-121 441.4 514 46.3
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 1.5e-121 441.0 466 47.6
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 1.5e-121 441.0 477 48.0
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 3.3e-121 439.9 507 45.8
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 9.7e-121 438.3 479 47.0
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 9.7e-121 438.3 477 47.6
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 1.3e-120 438.0 464 48.5
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 1.6e-120 437.6 471 47.3
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 2.8e-120 436.8 451 49.2
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 3.7e-120 436.4 468 48.3
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 8.2e-120 435.3 463 48.8
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 8.2e-120 435.3 471 47.6
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 8.2e-120 435.3 465 48.0
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 1.1e-119 434.9 451 47.9
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 1.8e-119 434.1 469 46.3
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 2.4e-119 433.7 469 46.7
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 4.1e-119 433.0 480 46.9
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 5.3e-119 432.6 469 46.7
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 9.0e-119 431.8 467 47.8
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 1.2e-118 431.4 475 47.8
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 2.0e-118 430.6 466 47.6
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 3.4e-118 429.9 504 44.6
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 3.4e-118 429.9 478 46.9
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 5.9e-118 429.1 473 47.4
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 1.0e-117 428.3 478 46.0
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 1.3e-117 427.9 512 45.9
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 1.7e-117 427.6 512 45.9
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 2.2e-117 427.2 515 44.9
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 2.2e-117 427.2 485 46.8
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 2.2e-117 427.2 470 47.2
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 2.2e-117 427.2 474 47.0
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 3.8e-117 426.4 444 48.9
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 1.1e-116 424.9 513 45.4
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 1.1e-116 424.9 516 45.0
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 1.4e-116 424.5 464 47.2
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 4.2e-116 422.9 444 48.6
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 4.2e-116 422.9 479 46.8
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 7.2e-116 422.2 514 45.3
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 7.2e-116 422.2 507 45.4
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 7.2e-116 422.2 480 46.2
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 9.4e-116 421.8 509 45.6
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 1.6e-115 421.0 474 45.8
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 2.7e-115 420.2 442 48.6
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 6.1e-115 419.1 482 46.9
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 6.1e-115 419.1 472 47.5
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 1.0e-114 418.3 473 46.9
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 1.0e-114 418.3 507 45.2
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 1.8e-114 417.5 467 47.1
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 1.8e-114 417.5 469 46.1
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 2.3e-114 417.2 513 44.1
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 3.0e-114 416.8 466 45.9
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 3.0e-114 416.8 470 46.6
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 3.9e-114 416.4 406 49.5
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 1.5e-113 414.5 457 47.3
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 1.5e-113 414.5 466 45.9
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 2.5e-113 413.7 500 45.8
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 4.3e-113 412.9 463 45.4
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 4.3e-113 412.9 460 47.0
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 5.7e-113 412.5 513 44.4
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 7.4e-113 412.1 519 43.7
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 1.3e-112 411.4 471 47.1
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 2.8e-112 410.2 472 45.8
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 6.3e-112 409.1 518 43.8
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 1.1e-111 408.3 452 47.8
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 6.9e-111 405.6 468 45.7
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 2.0e-110 404.1 457 44.9
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 2.6e-110 403.7 519 43.2
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 2.6e-110 403.7 405 47.4
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 2.6e-110 403.7 455 47.0
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 7.7e-110 402.1 478 44.4
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 7.7e-110 402.1 403 50.6
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.1e-108 398.3 470 45.3
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 4.2e-108 396.4 475 46.3
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 2.7e-107 393.7 526 42.2
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 2.7e-107 393.7 524 41.4
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 2.7e-107 393.7 457 43.5
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 3.6e-107 393.3 457 43.8
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 3.6e-107 393.3 472 44.5
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 6.1e-107 392.5 419 47.5
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.8e-106 391.0 452 46.5
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 1.8e-106 391.0 544 39.7
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 3.9e-106 389.8 491 44.2
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 4.8e-104 382.9 413 47.7
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 4.5e-102 376.3 414 47.3
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 2.1e-99 367.5 386 49.5
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 2.7e-99 367.1 507 41.6
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 8.8e-98 362.1 457 42.0
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 2.0e-97 360.9 350 52.0
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 9.7e-97 358.6 505 40.0
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 3.7e-96 356.7 565 39.1
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 1.8e-95 354.4 522 40.4
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 4.1e-95 353.2 511 39.3
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 9.4e-92 342.0 457 40.3
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.0e-90 338.6 451 43.7
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 2.0e-89 334.3 474 39.2
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 5.3e-87 326.2 403 43.7
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 8.5e-85 318.9 351 46.4
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 4.5e-70 270.0 385 39.7
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 3.4e-65 253.8 351 43.0
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 4.4e-65 253.4 323 42.1
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 2.2e-64 251.1 429 37.5
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 1.1e-60 238.8 327 40.7
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 2.3e-53 214.5 258 45.7
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 3.5e-46 190.7 299 38.5
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 9.9e-41 172.6 142 55.6
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 9.6e-28 129.4 105 56.2
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 2.3e-13 81.6 72 59.7
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 1.2e-09 69.3 99 32.3
Manes.17G077900 Manihot esculenta HOM05D000992 ORTHO05D001928 2.9e-08 64.7 195 24.6
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 1.1e-07 62.8 67 43.3
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 1.4e-07 62.4 63 41.3
Manes.15G128400 Manihot esculenta HOM05D000992 ORTHO05D001928 1.6e-06 58.9 198 24.7
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 7.9e-06 56.6 53 49.1


User provided reference genes

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