Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 0.0e+00 1475.3 770 100.0
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 4.3e-139 499.6 467 57.8
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 9.0e-137 491.9 479 55.5
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 5.0e-127 459.5 468 51.9
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.7e-125 453.8 468 51.3
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.6e-125 453.4 468 51.3
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 2.3e-124 450.7 468 50.9
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 3.0e-124 450.3 471 51.0
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 3.9e-124 449.9 476 51.5
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 6.7e-124 449.1 468 51.9
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 8.8e-124 448.7 466 52.1
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 2.0e-123 447.6 446 52.9
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 2.0e-123 447.6 467 51.0
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 1.7e-122 444.5 468 51.1
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 3.7e-122 443.4 466 51.7
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 3.7e-122 443.4 467 50.7
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.1e-121 441.8 467 50.5
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 1.4e-121 441.4 473 50.7
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 1.8e-121 441.0 484 50.4
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 4.1e-121 439.9 499 47.7
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 4.1e-121 439.9 474 49.4
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 9.1e-121 438.7 487 49.3
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.2e-120 438.3 473 49.0
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.2e-120 438.3 493 48.9
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.5e-120 438.0 468 50.9
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 2.0e-120 437.6 471 49.7
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.0e-120 437.6 469 49.7
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.4e-120 436.8 468 50.4
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 3.4e-120 436.8 467 50.3
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 3.4e-120 436.8 467 50.7
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.9e-120 436.0 466 50.4
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 7.7e-120 435.6 468 50.4
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 1.0e-119 435.3 467 50.5
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.3e-119 434.9 468 50.0
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.3e-119 434.9 486 47.9
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.3e-119 434.9 486 47.9
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.7e-119 434.5 468 50.2
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 2.9e-119 433.7 468 49.8
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 5.0e-119 433.0 502 47.6
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 5.0e-119 433.0 462 50.2
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 5.0e-119 433.0 495 48.5
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 5.0e-119 433.0 495 48.5
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 6.5e-119 432.6 502 47.6
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.1e-118 431.8 472 49.6
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 1.1e-118 431.8 453 51.2
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 1.4e-118 431.4 471 49.7
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.4e-118 431.4 468 50.0
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.9e-118 431.0 485 48.5
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 2.5e-118 430.6 468 49.1
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 4.2e-118 429.9 472 49.2
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 4.2e-118 429.9 469 48.6
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 4.2e-118 429.9 468 48.7
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 5.5e-118 429.5 472 48.9
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.6e-117 427.9 467 49.0
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 2.1e-117 427.6 468 49.4
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.8e-116 424.5 469 48.0
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.0e-116 423.7 469 48.2
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 6.7e-116 422.5 467 48.8
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 6.7e-116 422.5 482 47.5
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 6.7e-116 422.5 472 48.5
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 6.7e-116 422.5 453 49.9
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.5e-115 421.4 452 50.2
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 2.0e-115 421.0 468 49.1
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.3e-115 420.2 468 47.9
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-114 418.3 468 47.6
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 6.3e-114 416.0 471 47.3
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.4e-113 414.8 532 44.9
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.4e-113 414.8 475 48.4
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.8e-113 414.5 469 48.6
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 2.4e-113 414.1 472 48.3
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 7.0e-113 412.5 466 48.3
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 7.0e-113 412.5 469 47.1
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 9.1e-113 412.1 532 44.2
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.1e-113 412.1 480 46.7
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.6e-112 411.4 512 44.3
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 2.6e-112 410.6 473 48.4
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 2.6e-112 410.6 529 44.6
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 3.5e-112 410.2 469 48.2
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 4.5e-112 409.8 469 48.4
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 5.9e-112 409.5 491 46.4
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 5.9e-112 409.5 471 47.6
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 5.9e-112 409.5 514 45.7
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.3e-111 408.3 529 44.8
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.3e-111 408.3 529 44.8
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.1e-110 405.2 491 46.2
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 2.5e-110 404.1 489 46.0
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 3.2e-110 403.7 472 46.6
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 2.7e-109 400.6 545 43.7
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 4.7e-109 399.8 546 43.4
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.2e-108 396.4 428 50.2
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 5.2e-108 396.4 421 50.8
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 8.8e-108 395.6 466 47.2
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 7.0e-105 386.0 468 46.2
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 4.5e-104 383.3 461 47.5
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.3e-103 381.7 427 49.4
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.1e-101 374.4 487 45.6
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.4e-100 371.7 471 46.3
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 6.8e-100 369.4 484 42.4
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 5.4e-97 359.8 472 43.9
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 5.4e-97 359.8 412 46.8
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 4.5e-96 356.7 530 42.1
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.1e-94 352.1 467 43.9
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 2.5e-94 350.9 383 49.6
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.2e-93 348.6 343 52.8
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 2.7e-93 347.4 463 43.6
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 2.7e-93 347.4 572 40.0
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.0e-92 345.5 412 46.4
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 4.0e-92 343.6 373 48.8
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.0e-91 341.3 438 45.2
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 9.8e-91 339.0 343 51.6
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.2e-88 332.0 344 49.4
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 2.3e-87 327.8 454 43.6
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 7.5e-83 312.8 458 40.8
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 7.5e-83 312.8 464 40.5
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.4e-81 307.8 464 40.9
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 7.3e-78 296.2 507 38.3
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 9.8e-75 285.8 507 36.5
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 5.6e-70 270.0 342 44.4
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 2.9e-58 231.1 315 41.3
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 1.3e-55 222.2 208 54.3
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 3.6e-53 214.2 371 36.9
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 2.5e-46 191.4 222 45.5
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 6.0e-40 170.2 254 41.3
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.1e-36 159.5 339 33.3
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.5e-35 155.6 258 39.5
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 2.6e-35 154.8 159 49.7
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.9e-35 152.9 258 39.5
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 9.9e-35 152.9 186 43.5
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.6e-32 145.6 163 46.6
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.4e-28 132.5 133 56.4
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 1.3e-26 125.9 201 40.8
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.2e-26 125.2 258 34.9
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 3.0e-23 114.8 256 32.0
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 3.0e-23 114.8 109 52.3
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 2.5e-22 111.7 138 43.5
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 2.5e-22 111.7 110 48.2
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-21 109.4 369 26.6
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 6.3e-21 107.1 252 31.7
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.5e-19 102.4 103 50.5
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 7.6e-19 100.1 93 54.8
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.9e-18 98.2 95 52.6
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 3.8e-18 97.8 94 52.1
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 8.5e-18 96.7 107 45.8
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.5e-18 96.7 95 51.6
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.1e-17 96.3 95 51.6
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 3.6e-16 91.3 144 38.9
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.0e-15 89.7 93 48.4
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 2.5e-14 85.1 81 51.9
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 2.4e-12 78.6 236 28.0
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 4.1e-12 77.8 95 38.9
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 5.9e-11 73.9 66 56.1
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 5.0e-10 70.9 60 56.7
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 8.5e-10 70.1 59 57.6
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 1.9e-09 68.9 242 27.7
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.5e-09 67.4 109 36.7
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 9.4e-09 66.6 237 27.4
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.4e-07 62.8 63 47.6
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.4e-07 62.8 63 47.6
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.3e-07 62.0 62 50.0


User provided reference genes

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