Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 9.1e-69 263.5 134 100.0
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 2.5e-26 122.5 99 63.6
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 1.6e-25 119.8 92 64.1
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 8.1e-25 117.5 93 65.6
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 1.1e-24 117.1 92 64.1
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 1.4e-24 116.7 95 63.2
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 1.4e-24 116.7 95 63.2
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 1.4e-24 116.7 100 61.0
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 3.1e-24 115.5 98 59.2
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 3.1e-24 115.5 95 61.1
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 4.0e-24 115.2 92 64.1
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 4.0e-24 115.2 92 64.1
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 4.0e-24 115.2 100 62.0
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 4.0e-24 115.2 103 56.3
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 5.2e-24 114.8 95 62.1
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 6.8e-24 114.4 99 59.6
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 8.9e-24 114.0 98 60.2
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 8.9e-24 114.0 92 60.9
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 8.9e-24 114.0 93 62.4
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.2e-23 113.6 100 61.0
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 1.2e-23 113.6 93 62.4
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 2.0e-23 112.8 92 62.0
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 2.0e-23 112.8 98 60.2
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 2.6e-23 112.5 99 59.6
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 2.6e-23 112.5 92 63.0
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 2.6e-23 112.5 92 62.0
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 3.4e-23 112.1 92 63.0
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 3.4e-23 112.1 98 60.2
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.4e-23 111.7 92 62.0
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 4.4e-23 111.7 92 62.0
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.4e-23 111.7 92 59.8
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.5e-23 110.9 95 62.1
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 7.5e-23 110.9 93 61.3
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 7.5e-23 110.9 93 62.4
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 7.5e-23 110.9 92 59.8
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 7.5e-23 110.9 92 59.8
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 7.5e-23 110.9 92 59.8
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 9.8e-23 110.5 99 59.6
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 9.8e-23 110.5 95 60.0
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 1.3e-22 110.2 104 55.8
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.3e-22 110.2 121 50.4
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 1.7e-22 109.8 92 62.0
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.7e-22 109.8 92 62.0
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-22 109.8 92 64.1
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 1.7e-22 109.8 101 60.4
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.2e-22 109.4 92 60.9
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 2.2e-22 109.4 92 59.8
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 2.2e-22 109.4 101 59.4
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 2.2e-22 109.4 98 56.1
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 2.9e-22 109.0 92 59.8
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 3.7e-22 108.6 92 60.9
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 3.7e-22 108.6 92 60.9
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 4.9e-22 108.2 95 56.8
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 4.9e-22 108.2 95 57.9
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 4.9e-22 108.2 98 57.1
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.9e-22 108.2 92 59.8
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 6.4e-22 107.8 92 58.7
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 6.4e-22 107.8 95 57.9
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 6.4e-22 107.8 95 57.9
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 6.4e-22 107.8 92 59.8
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 8.3e-22 107.5 101 54.5
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 8.3e-22 107.5 92 58.7
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 1.1e-21 107.1 92 59.8
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 1.1e-21 107.1 98 56.1
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.4e-21 106.7 92 59.8
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 1.4e-21 106.7 92 60.9
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 1.4e-21 106.7 96 57.3
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 1.9e-21 106.3 92 57.6
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 2.4e-21 105.9 98 56.1
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 2.4e-21 105.9 92 58.7
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 3.2e-21 105.5 98 55.1
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.1e-21 105.1 92 58.7
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 7.1e-21 104.4 95 57.9
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 7.1e-21 104.4 97 55.7
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 9.2e-21 104.0 92 56.5
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 9.2e-21 104.0 92 57.6
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 9.2e-21 104.0 98 57.1
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.2e-20 103.6 95 57.9
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 1.2e-20 103.6 98 56.1
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.2e-20 103.6 92 57.6
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.2e-20 103.6 92 57.6
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 1.2e-20 103.6 92 57.6
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.2e-20 103.6 95 55.8
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 1.6e-20 103.2 92 57.6
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 1.6e-20 103.2 92 57.6
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 2.1e-20 102.8 94 56.4
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 2.1e-20 102.8 92 56.5
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 2.1e-20 102.8 92 58.7
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 2.7e-20 102.4 92 58.7
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 2.7e-20 102.4 92 57.6
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 2.7e-20 102.4 98 55.1
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.7e-20 102.4 98 55.1
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 2.7e-20 102.4 98 55.1
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 3.5e-20 102.1 92 57.6
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 3.5e-20 102.1 92 57.6
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 3.5e-20 102.1 92 57.6
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 3.5e-20 102.1 92 57.6
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 3.5e-20 102.1 98 54.1
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 3.5e-20 102.1 92 55.4
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.0e-19 100.5 93 58.1
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 1.0e-19 100.5 93 59.1
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 1.7e-19 99.8 92 56.5
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.7e-19 99.8 98 53.1
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 3.0e-19 99.0 92 56.5
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.9e-19 98.6 95 56.8
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.9e-19 98.6 95 56.8
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.9e-19 98.6 95 56.8
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 5.1e-19 98.2 92 55.4
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 5.1e-19 98.2 92 55.4
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 5.1e-19 98.2 92 55.4
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 5.1e-19 98.2 92 55.4
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 8.6e-19 97.4 81 58.0
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.5e-18 96.7 75 60.0
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.9e-18 96.3 92 53.3
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 1.6e-17 93.2 87 57.5
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.8e-17 92.4 119 45.4
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.1e-16 90.5 119 45.4
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.9e-14 82.4 119 44.5
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.4e-14 81.3 119 42.9
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.1e-13 77.8 100 45.0
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.5e-12 75.5 80 51.2
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.5e-10 70.1 69 55.1
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 4.3e-10 68.6 70 50.0
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.6e-09 66.6 60 55.0
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 4.7e-09 65.1 98 41.8
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.0e-07 59.7 57 57.9
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.6e-07 59.3 69 46.4
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 4.4e-07 58.5 82 41.5
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 9.9e-07 57.4 34 79.4


User provided reference genes

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