Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 7.9e-171 603.6 286 100.0
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 1.5e-113 413.3 278 67.6
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 2.9e-112 409.1 278 68.0
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 1.4e-111 406.8 278 69.4
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 9.2e-111 404.1 278 70.1
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 1.2e-110 403.7 278 67.3
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 1.2e-110 403.7 278 69.4
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 1.6e-110 403.3 278 68.7
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 2.7e-110 402.5 278 66.9
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 2.7e-110 402.5 284 66.9
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 3.5e-110 402.1 278 66.5
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 3.5e-110 402.1 278 66.5
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 3.5e-110 402.1 278 68.0
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 3.5e-110 402.1 278 68.3
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 1.0e-109 400.6 284 65.8
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.0e-109 400.6 278 67.6
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 1.0e-109 400.6 278 68.3
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 1.0e-109 400.6 277 68.2
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 1.3e-109 400.2 284 66.2
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 1.3e-109 400.2 284 66.2
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 1.3e-109 400.2 278 66.2
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.3e-109 400.2 280 66.8
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 1.7e-109 399.8 284 65.8
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 2.3e-109 399.4 284 65.5
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 2.3e-109 399.4 284 66.2
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 2.3e-109 399.4 279 66.7
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 3.0e-109 399.1 285 66.3
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 3.0e-109 399.1 278 67.6
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 3.0e-109 399.1 280 66.8
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 3.0e-109 399.1 285 66.3
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 3.9e-109 398.7 280 65.7
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 3.9e-109 398.7 284 65.5
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 6.6e-109 397.9 280 66.1
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 6.6e-109 397.9 277 66.4
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 6.6e-109 397.9 277 66.8
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 8.6e-109 397.5 278 67.6
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 8.6e-109 397.5 278 67.3
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 8.6e-109 397.5 282 67.0
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 1.1e-108 397.1 284 65.1
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 1.1e-108 397.1 284 65.1
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 1.5e-108 396.7 284 65.8
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 1.5e-108 396.7 284 65.1
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 1.5e-108 396.7 278 65.8
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 1.9e-108 396.4 277 66.1
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 2.5e-108 396.0 278 65.8
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.5e-108 396.0 279 67.0
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 3.3e-108 395.6 280 66.1
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 3.3e-108 395.6 278 66.5
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 4.3e-108 395.2 279 67.4
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 4.3e-108 395.2 284 66.2
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 4.3e-108 395.2 284 66.2
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 5.6e-108 394.8 278 65.8
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 5.6e-108 394.8 278 65.8
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 7.3e-108 394.4 284 65.5
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 7.3e-108 394.4 284 65.5
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 7.3e-108 394.4 278 66.5
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 7.3e-108 394.4 278 65.5
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 9.5e-108 394.0 278 66.9
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 9.5e-108 394.0 278 66.9
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 9.5e-108 394.0 271 68.3
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 1.2e-107 393.7 284 65.1
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 1.6e-107 393.3 284 65.1
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 1.6e-107 393.3 279 66.7
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 2.1e-107 392.9 278 66.5
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 2.1e-107 392.9 278 67.3
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 2.1e-107 392.9 277 65.7
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 2.8e-107 392.5 280 65.4
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 3.6e-107 392.1 280 67.1
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 3.6e-107 392.1 278 65.5
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 3.6e-107 392.1 284 65.8
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 4.7e-107 391.7 280 66.8
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 4.7e-107 391.7 280 65.7
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 4.7e-107 391.7 278 66.9
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 4.7e-107 391.7 284 65.1
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 4.7e-107 391.7 278 66.5
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 6.2e-107 391.3 278 65.1
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 8.1e-107 391.0 280 65.0
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 1.1e-106 390.6 278 66.2
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 1.1e-106 390.6 278 65.5
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 1.4e-106 390.2 278 65.8
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 2.3e-106 389.4 278 65.5
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 3.1e-106 389.0 278 64.7
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 3.1e-106 389.0 278 65.8
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 5.2e-106 388.3 282 65.6
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 6.8e-106 387.9 299 63.2
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 8.9e-106 387.5 279 64.9
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 1.5e-105 386.7 284 65.8
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 1.5e-105 386.7 278 65.8
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 2.6e-105 386.0 271 66.1
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 4.4e-105 385.2 278 65.1
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 4.4e-105 385.2 278 65.8
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 5.8e-105 384.8 280 63.6
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 9.8e-105 384.0 278 66.5
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 9.8e-105 384.0 282 65.6
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 9.8e-105 384.0 277 65.0
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 1.3e-104 383.6 281 65.1
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 2.9e-104 382.5 281 65.1
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.9e-104 382.5 280 64.3
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 4.9e-104 381.7 326 57.1
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 8.3e-104 380.9 277 65.3
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 8.3e-104 380.9 278 64.7
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 2.4e-103 379.4 284 63.0
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 4.1e-103 378.6 278 64.0
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.2e-102 377.1 295 62.4
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 2.1e-102 376.3 278 64.7
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 6.6e-101 371.3 281 63.0
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 3.3e-100 369.0 278 64.4
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 4.3e-100 368.6 282 62.4
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 2.1e-99 366.3 278 64.4
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 5.2e-98 361.7 278 62.6
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 4.4e-97 358.6 278 60.1
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 9.9e-97 357.5 235 70.6
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 6.4e-96 354.8 243 68.7
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 3.9e-93 345.5 277 58.8
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 2.5e-92 342.8 235 68.5
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 1.6e-91 340.1 237 68.8
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 2.1e-91 339.7 284 57.7
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 2.8e-91 339.3 273 59.3
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 5.6e-84 315.1 220 67.7
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 9.6e-84 314.3 224 65.2
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 9.9e-81 304.3 190 72.6
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 7.9e-70 268.1 314 44.6
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 3.9e-69 265.8 288 49.3
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 5.1e-69 265.4 277 48.7
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 2.5e-68 263.1 278 50.4
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 2.1e-67 260.0 276 50.0
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 4.0e-66 255.8 166 71.1
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 2.0e-65 253.4 171 68.4
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 9.3e-63 244.6 269 48.0
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 5.3e-58 228.8 230 50.9
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 1.0e-32 144.8 113 61.9
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 2.6e-28 130.2 104 60.6
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 3.8e-16 89.7 76 52.6
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 1.5e-12 77.8 83 44.6
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 5.7e-12 75.9 52 67.3
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 2.8e-11 73.6 60 55.0


User provided reference genes

Program Settings