Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 0.0e+00 1835.1 992 100.0
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 8.3e-34 150.2 116 61.2
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 5.4e-33 147.5 117 60.7
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 7.8e-32 143.7 113 62.8
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.3e-31 142.1 114 58.8
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 1.2e-27 129.8 91 68.1
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 2.0e-27 129.0 114 54.4
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 2.6e-27 128.6 115 56.5
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 3.4e-27 128.3 115 56.5
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 4.4e-27 127.9 115 56.5
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 2.2e-26 125.6 122 55.7
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 3.7e-26 124.8 101 61.4
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 4.9e-26 124.4 116 55.2
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.4e-26 124.0 141 46.8
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 9.2e-25 120.2 118 51.7
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 3.3e-22 111.7 118 48.3
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 5.6e-22 110.9 106 50.0
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 1.6e-21 109.4 114 49.1
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 4.7e-21 107.8 115 47.0
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 6.2e-21 107.5 119 47.9
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 6.2e-21 107.5 118 49.2
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 3.1e-20 105.1 117 51.3
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 8.9e-20 103.6 114 48.2
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 4.9e-18 97.8 117 41.9
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 4.9e-18 97.8 114 46.5
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 6.4e-18 97.4 117 44.4
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 6.4e-18 97.4 114 44.7
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 6.4e-18 97.4 119 43.7
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.9e-17 95.9 117 41.9
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 1.9e-17 95.9 117 43.6
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 3.2e-17 95.1 78 56.4
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 4.1e-17 94.7 114 43.0
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 7.1e-17 94.0 118 44.1
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 9.2e-17 93.6 116 43.1
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 9.2e-17 93.6 114 42.1
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 1.6e-16 92.8 114 43.0
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 2.7e-16 92.0 117 41.0
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 4.6e-16 91.3 116 41.4
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 4.6e-16 91.3 114 43.0
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 4.6e-16 91.3 117 46.2
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 7.8e-16 90.5 64 65.6
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 7.8e-16 90.5 114 43.9
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 1.3e-15 89.7 118 41.5
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 1.3e-15 89.7 117 41.9
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 3.9e-15 88.2 118 41.5
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 6.6e-15 87.4 118 40.7
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 6.6e-15 87.4 114 42.1
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 1.5e-14 86.3 117 40.2
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 1.5e-14 86.3 118 39.8
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 1.5e-14 86.3 114 40.4
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.9e-14 85.9 118 39.0
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 1.9e-14 85.9 116 41.4
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.9e-14 85.9 114 42.1
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.9e-14 85.9 114 42.1
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 1.9e-14 85.9 114 42.1
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 3.3e-14 85.1 114 40.4
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 4.3e-14 84.7 117 39.3
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 5.6e-14 84.3 114 42.1
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 9.5e-14 83.6 116 40.5
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 1.2e-13 83.2 114 41.2
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 1.2e-13 83.2 116 38.8
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.6e-13 82.8 122 36.9
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 1.6e-13 82.8 114 38.6
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 2.1e-13 82.4 114 41.2
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 2.1e-13 82.4 114 36.8
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 2.8e-13 82.0 191 33.0
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 3.6e-13 81.6 124 38.7
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 3.6e-13 81.6 114 39.5
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 3.6e-13 81.6 114 41.2
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 3.6e-13 81.6 114 39.5
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 4.7e-13 81.3 114 40.4
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 6.2e-13 80.9 116 40.5
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 6.2e-13 80.9 112 39.3
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 8.1e-13 80.5 118 38.1
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 8.1e-13 80.5 114 38.6
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 8.1e-13 80.5 116 36.2
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.1e-12 80.1 115 38.3
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 1.1e-12 80.1 115 38.3
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.4e-12 79.7 114 37.7
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 1.4e-12 79.7 114 40.4
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 2.3e-12 79.0 116 39.7
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 2.3e-12 79.0 116 37.1
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.3e-12 79.0 114 37.7
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 2.3e-12 79.0 114 38.6
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 3.1e-12 78.6 136 38.2
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.0e-12 78.2 104 40.4
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 4.0e-12 78.2 115 37.4
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 4.0e-12 78.2 115 37.4
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 5.2e-12 77.8 116 39.7
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 5.2e-12 77.8 115 37.4
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 5.2e-12 77.8 116 37.9
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 6.8e-12 77.4 116 38.8
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 8.9e-12 77.0 115 40.0
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.2e-11 76.6 114 36.8
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.5e-11 76.3 115 36.5
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 2.0e-11 75.9 114 37.7
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.6e-11 75.5 116 37.1
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 3.4e-11 75.1 113 38.1
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 2.9e-10 72.0 116 37.1
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 4.9e-10 71.2 88 43.2
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 6.4e-10 70.9 114 37.7
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.4e-09 69.7 116 33.6
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 1.9e-09 69.3 114 36.0
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 4.1e-09 68.2 100 37.0
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 3.5e-08 65.1 115 35.7
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 3.5e-08 65.1 114 35.1
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.7e-07 62.8 55 50.9
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 1.7e-07 62.8 116 31.9
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 2.3e-07 62.4 54 53.7
SEGI_00674 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 3.0e-07 62.0 54 59.3
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.9e-06 59.3 114 33.3
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 1.9e-06 59.3 114 31.6
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 5.6e-06 57.8 114 31.6


User provided reference genes

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