Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 2.6e-172 609.4 525 100.0
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 2.0e-23 114.8 66 74.2
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 2.7e-23 114.4 71 71.8
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 2.7e-23 114.4 63 76.2
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 2.7e-23 114.4 71 70.4
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 2.7e-23 114.4 71 70.4
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 2.7e-23 114.4 66 75.8
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 2.7e-23 114.4 71 71.8
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 3.5e-23 114.0 65 75.4
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 5.9e-23 113.2 66 72.7
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 5.9e-23 113.2 71 70.4
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 5.9e-23 113.2 71 70.4
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 5.9e-23 113.2 66 74.2
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 5.9e-23 113.2 66 72.7
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 7.8e-23 112.8 71 70.4
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 7.8e-23 112.8 71 70.4
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 7.8e-23 112.8 63 73.0
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.0e-22 112.5 66 71.2
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 1.3e-22 112.1 71 69.0
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 1.3e-22 112.1 74 67.6
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.7e-22 111.7 66 71.2
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 1.7e-22 111.7 71 64.8
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 1.7e-22 111.7 71 64.8
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.7e-22 111.7 66 71.2
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 1.7e-22 111.7 66 69.7
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 2.3e-22 111.3 65 70.8
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 2.3e-22 111.3 71 69.0
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 2.3e-22 111.3 65 73.8
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.0e-22 110.9 71 69.0
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.0e-22 110.9 71 69.0
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 3.0e-22 110.9 71 69.0
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 3.0e-22 110.9 71 67.6
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 3.0e-22 110.9 66 69.7
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 3.0e-22 110.9 66 69.7
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 3.0e-22 110.9 71 67.6
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 3.9e-22 110.5 71 67.6
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 3.9e-22 110.5 71 69.0
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 3.9e-22 110.5 71 67.6
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 3.9e-22 110.5 65 70.8
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 3.9e-22 110.5 65 70.8
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 3.9e-22 110.5 65 70.8
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 3.9e-22 110.5 71 69.0
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 3.9e-22 110.5 71 67.6
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 5.0e-22 110.2 66 69.7
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 5.0e-22 110.2 66 69.7
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 5.0e-22 110.2 70 65.7
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 6.6e-22 109.8 71 67.6
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 6.6e-22 109.8 66 68.2
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 8.6e-22 109.4 66 71.2
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 8.6e-22 109.4 66 69.7
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 8.6e-22 109.4 65 70.8
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 1.1e-21 109.0 66 69.7
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.1e-21 109.0 71 67.6
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.1e-21 109.0 71 67.6
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.1e-21 109.0 65 69.2
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.1e-21 109.0 65 70.8
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 1.1e-21 109.0 66 69.7
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.1e-21 109.0 66 69.7
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.1e-21 109.0 66 69.7
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 1.1e-21 109.0 71 67.6
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 1.1e-21 109.0 65 69.2
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 1.1e-21 109.0 66 69.7
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 1.1e-21 109.0 65 70.8
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 1.9e-21 108.2 71 67.6
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 1.9e-21 108.2 66 69.7
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 1.9e-21 108.2 71 66.2
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 2.5e-21 107.8 66 68.2
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 2.5e-21 107.8 66 69.7
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 3.3e-21 107.5 66 65.2
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 5.6e-21 106.7 65 69.2
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 5.6e-21 106.7 66 68.2
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 7.3e-21 106.3 66 68.2
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 9.5e-21 105.9 66 68.2
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 2.8e-20 104.4 66 66.7
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 3.6e-20 104.0 65 67.7
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 4.7e-20 103.6 71 62.0
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 4.7e-20 103.6 71 64.8
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.7e-20 103.6 66 69.7
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.1e-19 102.4 66 65.2
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 1.1e-19 102.4 66 65.2
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 3.1e-19 100.9 66 63.6
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 3.1e-19 100.9 71 62.0
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 4.0e-19 100.5 66 63.6
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 4.0e-19 100.5 66 63.6
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 4.0e-19 100.5 66 63.6
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 4.0e-19 100.5 66 63.6
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 4.0e-19 100.5 66 63.6
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 4.0e-19 100.5 66 63.6
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 8.9e-19 99.4 81 56.8
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 1.2e-18 99.0 68 61.8
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 3.7e-17 94.0 48 85.4
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 6.4e-17 93.2 54 72.2
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 1.9e-16 91.7 54 66.7
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 9.2e-16 89.4 52 69.2
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 1.7e-14 85.1 66 59.1
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 3.0e-14 84.3 99 45.5
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 8.6e-14 82.8 64 57.8
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 1.9e-13 81.6 48 70.8
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 7.3e-13 79.7 45 75.6
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 7.3e-13 79.7 45 75.6
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 7.3e-13 79.7 57 63.2
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 9.5e-13 79.3 45 73.3
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 5.2e-11 73.6 70 54.3
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 2.6e-10 71.2 59 52.5
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 7.8e-07 59.7 40 65.0


User provided reference genes

Program Settings