Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g12000 Chara braunii HOM05D004167 ORTHO05D005012 1.9e-127 459.1 231 100.0
Pp3c6_19470 Physcomitrium patens HOM05D004167 ORTHO05D005012 3.4e-47 192.6 185 48.6
Mapoly0005s0180 Marchantia polymorpha HOM05D004167 ORTHO05D005012 3.8e-46 189.1 187 54.5
MD07G1198100 Malus domestica HOM05D004167 ORTHO05D005012 2.4e-45 186.4 165 56.4
SEGI_18748 Sequoiadendron giganteum HOM05D004167 ORTHO05D005012 7.1e-45 184.9 162 58.0
CSS0037407 Camellia sinensis var. sinensis HOM05D004167 ORTHO05D005012 2.7e-44 183.0 169 54.4
Ciclev10032053m.g Citrus clementina HOM05D004167 ORTHO05D005012 7.8e-44 181.4 195 49.2
Rhsim09G0165800 Rhododendron simsii HOM05D004167 ORTHO05D005012 7.8e-44 181.4 176 52.3
Duzib114G0485 Durio zibethinus HOM05D004167 ORTHO05D005012 1.0e-43 181.0 171 55.0
Eucgr.G02933 Eucalyptus grandis HOM05D004167 ORTHO05D005012 3.0e-43 179.5 158 57.0
Dinv03048 Davidia involucrata HOM05D004167 ORTHO05D005012 3.9e-43 179.1 169 53.8
Lalb_Chr10g0091651 Lupinus albus HOM05D004167 ORTHO05D005012 3.9e-43 179.1 196 49.0
MD01G1133900 Malus domestica HOM05D004167 ORTHO05D005012 5.1e-43 178.7 196 49.5
Thecc.10G042500 Theobroma cacao HOM05D004167 ORTHO05D005012 5.1e-43 178.7 175 53.1
Manes.07G116100 Manihot esculenta HOM05D004167 ORTHO05D005012 6.6e-43 178.3 188 49.5
TAR623G0075 Trochodendron aralioides HOM05D004167 ORTHO05D005012 6.6e-43 178.3 173 52.6
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 8.7e-43 177.9 187 51.3
Duzib106G0246 Durio zibethinus HOM05D004167 ORTHO05D005012 8.7e-43 177.9 198 50.0
CsaV3_5G026660 Cucumis sativus L. HOM05D004167 ORTHO05D005012 1.5e-42 177.2 179 48.6
ATR0559G365 Amborella trichopoda HOM05D004167 ORTHO05D005012 1.9e-42 176.8 164 57.3
EL10Ac2g04752 Beta vulgaris HOM05D004167 ORTHO05D005012 1.9e-42 176.8 185 50.3
THA.LOC104824275 Tarenaya hassleriana HOM05D004167 ORTHO05D005012 1.9e-42 176.8 187 49.2
Gohir.D10G228300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.5e-42 176.4 134 62.7
Gorai.011G260700 Gossypium raimondii HOM05D004167 ORTHO05D005012 2.5e-42 176.4 134 62.7
Phvul.008G010800 Phaseolus vulgaris HOM05D004167 ORTHO05D005012 2.5e-42 176.4 153 55.6
Potri.008G055700 Populus trichocarpa HOM05D004167 ORTHO05D005012 2.5e-42 176.4 173 53.8
Atru.chr12.453 Acer truncatum HOM05D004167 ORTHO05D005012 3.3e-42 176.0 134 64.9
Atru.chr12.475 Acer truncatum HOM05D004167 ORTHO05D005012 3.3e-42 176.0 134 64.9
Manes.10G030400 Manihot esculenta HOM05D004167 ORTHO05D005012 3.3e-42 176.0 215 46.0
Zm00001eb062720 Zea mays HOM05D004167 ORTHO05D005012 3.3e-42 176.0 214 46.7
Actinidia13047 Actinidia chinensis HOM05D004167 ORTHO05D005012 4.3e-42 175.6 206 47.6
Hund16089 Selenicereus undatus HOM05D004167 ORTHO05D005012 4.3e-42 175.6 140 60.7
TAR633G1670 Trochodendron aralioides HOM05D004167 ORTHO05D005012 4.3e-42 175.6 134 63.4
Nitab4.5_0006489g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 5.6e-42 175.3 170 52.9
Potri.010G204000 Populus trichocarpa HOM05D004167 ORTHO05D005012 5.6e-42 175.3 171 54.4
MELO3C021632.2 Cucumis melo HOM05D004167 ORTHO05D005012 7.3e-42 174.9 169 50.3
Cfa001475 Carpinus fangiana HOM05D004167 ORTHO05D005012 9.6e-42 174.5 210 47.1
Nitab4.5_0010256g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 9.6e-42 174.5 170 52.4
Ca_07311_v3 Cicer arietinum L. HOM05D004167 ORTHO05D005012 1.2e-41 174.1 169 52.7
Peaxi162Scf00015g01117 Petunia axillaris HOM05D004167 ORTHO05D005012 1.2e-41 174.1 136 61.0
Ah.16g102290 Amaranthus hybridus HOM05D004167 ORTHO05D005012 1.6e-41 173.7 158 57.0
Lj1g0019937 Lotus japonicus HOM05D004167 ORTHO05D005012 1.6e-41 173.7 163 52.8
TWI15G0568 Tripterygium wilfordii HOM05D004167 ORTHO05D005012 1.6e-41 173.7 195 47.2
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 2.1e-41 173.3 180 52.2
Psat3g163360 Pisum sativum HOM05D004167 ORTHO05D005012 2.1e-41 173.3 206 47.1
Hund13759 Selenicereus undatus HOM05D004167 ORTHO05D005012 2.1e-41 173.3 136 61.8
TPR.G1356 Trifolium pratense HOM05D004167 ORTHO05D005012 2.1e-41 173.3 205 46.8
GSVIVG01016551001 Vitis vinifera HOM05D004167 ORTHO05D005012 2.1e-41 173.3 171 55.0
Dinv26013 Davidia involucrata HOM05D004167 ORTHO05D005012 3.6e-41 172.6 169 51.5
ECA232G2013 Erigeron canadensis HOM05D004167 ORTHO05D005012 3.6e-41 172.6 171 52.6
Glyma.02G091700 Glycine max HOM05D004167 ORTHO05D005012 3.6e-41 172.6 159 52.8
PGR142G3800 Punica granatum HOM05D004167 ORTHO05D005012 3.6e-41 172.6 158 53.8
BraA03t11449Z Brassica rapa HOM05D004167 ORTHO05D005012 4.7e-41 172.2 180 50.6
Medtr7g026260 Medicago truncatula HOM05D004167 ORTHO05D005012 4.7e-41 172.2 208 47.1
Nn2g10367 Nelumbo nucifera HOM05D004167 ORTHO05D005012 4.7e-41 172.2 155 56.1
CiPaw.02G183800 Carya illinoinensis HOM05D004167 ORTHO05D005012 6.2e-41 171.8 173 50.3
DCAR_011694 Daucus carota HOM05D004167 ORTHO05D005012 6.2e-41 171.8 167 53.3
Gorai.009G319400 Gossypium raimondii HOM05D004167 ORTHO05D005012 6.2e-41 171.8 168 53.0
Nn5g26919 Nelumbo nucifera HOM05D004167 ORTHO05D005012 6.2e-41 171.8 169 53.3
CAN.G1013.26 Capsicum annuum HOM05D004167 ORTHO05D005012 8.1e-41 171.4 169 50.3
Gohir.A05G301600 Gossypium hirsutum HOM05D004167 ORTHO05D005012 8.1e-41 171.4 134 61.9
Lsat_1_v5_gn_9_65421 Lactuca sativa HOM05D004167 ORTHO05D005012 8.1e-41 171.4 181 50.3
Sabra08G0040300 Salix brachista HOM05D004167 ORTHO05D005012 8.1e-41 171.4 206 46.6
Sabra10G0157600 Salix brachista HOM05D004167 ORTHO05D005012 8.1e-41 171.4 171 53.8
Sed0007402 Sechium edule HOM05D004167 ORTHO05D005012 8.1e-41 171.4 169 50.3
VMungo1383G2822 Vigna mungo HOM05D004167 ORTHO05D005012 8.1e-41 171.4 171 53.8
Cc02_g07870 Coffea canephora HOM05D004167 ORTHO05D005012 1.1e-40 171.0 168 51.2
FAN01G0242 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.1e-40 171.0 163 54.0
FAN01G1831 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.1e-40 171.0 163 54.0
FAN03G2888 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.4e-40 170.6 143 59.4
FAN10G4113 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.4e-40 170.6 143 59.4
Oeu064381.1 Olea europaea HOM05D004167 ORTHO05D005012 1.4e-40 170.6 158 52.5
Oeu064382.1 Olea europaea HOM05D004167 ORTHO05D005012 1.4e-40 170.6 158 52.5
PSO210G3999 Papaver somniferum HOM05D004167 ORTHO05D005012 1.4e-40 170.6 134 62.7
QL08p059807 Quercus lobata HOM05D004167 ORTHO05D005012 1.4e-40 170.6 171 53.8
Glyma.18G291100 Glycine max HOM05D004167 ORTHO05D005012 1.8e-40 170.2 190 48.4
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 1.8e-40 170.2 195 45.6
PSO210G2827 Papaver somniferum HOM05D004167 ORTHO05D005012 1.8e-40 170.2 134 62.7
Migut.F01510 Erythranthe guttata HOM05D004167 ORTHO05D005012 2.4e-40 169.9 155 54.2
Thhalv10016901m.g Eutrema salsugineum HOM05D004167 ORTHO05D005012 2.4e-40 169.9 171 50.9
FvH4_7g22450 Fragaria vesca HOM05D004167 ORTHO05D005012 2.4e-40 169.9 177 52.5
FAN06G2439 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.4e-40 169.9 177 52.5
FAN06G3201 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.4e-40 169.9 177 52.5
Sp4g21890 Schrenkiella parvula HOM05D004167 ORTHO05D005012 2.4e-40 169.9 171 51.5
arahy.Tifrunner.gnm1.ann1.A8V5RI Arachis hypogaea HOM05D004167 ORTHO05D005012 3.1e-40 169.5 134 59.7
arahy.Tifrunner.gnm1.ann1.TM884Y Arachis hypogaea HOM05D004167 ORTHO05D005012 3.1e-40 169.5 134 59.7
Prupe.2G235200 Prunus persica HOM05D004167 ORTHO05D005012 3.1e-40 169.5 202 47.0
BolC4t22416H Brassica oleracea HOM05D004167 ORTHO05D005012 4.0e-40 169.1 135 60.7
MBI14_g20108_MAGBIO Magnolia biondii HOM05D004167 ORTHO05D005012 4.0e-40 169.1 136 61.0
Os03g0821800 Oryza sativa ssp. japonica HOM05D004167 ORTHO05D005012 4.0e-40 169.1 181 52.5
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 4.0e-40 169.1 134 61.9
unitig_899.g15067 Utricularia gibba HOM05D004167 ORTHO05D005012 4.0e-40 169.1 150 56.0
HPP92_020200 Vanilla planifolia HOM05D004167 ORTHO05D005012 4.0e-40 169.1 174 52.3
A05p06810 Brassica napus HOM05D004167 ORTHO05D005012 5.3e-40 168.7 168 52.4
Carub.0004s2167 Capsella rubella HOM05D004167 ORTHO05D005012 5.3e-40 168.7 170 51.2
Cpa.g.sc1.403 Carica papaya HOM05D004167 ORTHO05D005012 5.3e-40 168.7 153 55.6
SMO367G0757 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 6.9e-40 168.3 141 61.0
CDE09G1012 Ceratophyllum demersum HOM05D004167 ORTHO05D005012 9.0e-40 167.9 179 49.7
Gohir.D05G301300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 9.0e-40 167.9 134 61.2
Sc11g0007950 Simmondsia chinensis HOM05D004167 ORTHO05D005012 9.0e-40 167.9 164 52.4
Aa31LG5G20010 Aethionema arabicum HOM05D004167 ORTHO05D005012 1.2e-39 167.5 189 47.6
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 1.2e-39 167.5 173 50.9
RcHm_v2.0_Chr1g0367061 Rosa chinensis HOM05D004167 ORTHO05D005012 1.2e-39 167.5 173 52.0
ECA238G2661 Erigeron canadensis HOM05D004167 ORTHO05D005012 1.5e-39 167.2 150 55.3
Sed0025003 Sechium edule HOM05D004167 ORTHO05D005012 1.5e-39 167.2 144 57.6
AUR62039381 Chenopodium quinoa HOM05D004167 ORTHO05D005012 2.0e-39 166.8 195 47.7
Solyc05g054460.3 Solanum lycopersicum HOM05D004167 ORTHO05D005012 2.6e-39 166.4 134 59.0
Sopen05g032950 Solanum pennellii HOM05D004167 ORTHO05D005012 2.6e-39 166.4 134 59.0
ClCG07G003290 Citrullus lanatus HOM05D004167 ORTHO05D005012 4.4e-39 165.6 183 48.1
C03p26250 Brassica napus HOM05D004167 ORTHO05D005012 7.6e-39 164.9 135 59.3
AT2G39630 Arabidopsis thaliana HOM05D004167 ORTHO05D005012 1.3e-38 164.1 159 51.6
BraA05t19647Z Brassica rapa HOM05D004167 ORTHO05D005012 1.3e-38 164.1 135 59.3
AL4G37040 Arabidopsis lyrata HOM05D004167 ORTHO05D005012 1.7e-38 163.7 170 49.4
MSTRG.303 Avicennia marina HOM05D004167 ORTHO05D005012 1.7e-38 163.7 134 59.0
SalBow6G7174 Salvia bowleyana HOM05D004167 ORTHO05D005012 2.2e-38 163.3 127 60.6
PGSC0003DMG400023531 Solanum tuberosum HOM05D004167 ORTHO05D005012 2.2e-38 163.3 134 59.0
PSO079G0067 Papaver somniferum HOM05D004167 ORTHO05D005012 2.9e-38 162.9 158 53.2
SGA_v2.0_scaffold108G31010 Striga asiatica HOM05D004167 ORTHO05D005012 2.9e-38 162.9 135 56.3
MELO3C023850.2 Cucumis melo HOM05D004167 ORTHO05D005012 8.4e-38 161.4 182 47.8
BcaC02g12089 Brassica carinata HOM05D004167 ORTHO05D005012 1.1e-37 161.0 135 58.5
C04p07990 Brassica napus HOM05D004167 ORTHO05D005012 1.1e-37 161.0 135 58.5
vmacro10234 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 1.9e-37 160.2 127 59.8
AagrBONN_evm.TU.Sc2ySwM_344.1330 Anthoceros agrestis HOM05D004167 ORTHO05D005012 2.4e-37 159.8 138 58.0
CsaV3_5G008030 Cucumis sativus L. HOM05D004167 ORTHO05D005012 4.2e-37 159.1 192 46.4
CiPaw.01G287300 Carya illinoinensis HOM05D004167 ORTHO05D005012 7.1e-37 158.3 158 50.0
BolC3t15010H Brassica oleracea HOM05D004167 ORTHO05D005012 1.2e-36 157.5 127 59.1
Gohir.A10G218700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 4.6e-36 155.6 170 50.0
Pp3c3_37810 Physcomitrium patens HOM05D004167 ORTHO05D005012 1.7e-35 153.7 213 44.1
Cre16.g652850 Chlamydomonas reinhardtii HOM05D004167 ORTHO05D005012 2.1e-33 146.7 192 42.2
AagrBONN_evm.TU.Sc2ySwM_117.3937 Anthoceros agrestis HOM05D004167 ORTHO05D005012 1.4e-32 144.1 135 53.3
ClCG09G019760 Citrullus lanatus HOM05D004167 ORTHO05D005012 1.2e-28 131.0 206 38.3
CARHR134480 Cardamine hirsuta HOM05D004167 ORTHO05D005012 1.8e-27 127.1 105 56.2
TAR627G1156 Trochodendron aralioides HOM05D004167 ORTHO05D005012 5.6e-26 122.1 85 62.4
SMO142G0075 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 2.8e-25 119.8 189 38.6
PRCOL_00006983 Prasinoderma coloniale HOM05D004167 ORTHO05D005012 3.1e-24 116.3 147 44.2
BcaB02g09101 Brassica carinata HOM05D004167 ORTHO05D005012 4.0e-24 115.9 92 60.9
BcaC01g05485 Brassica carinata HOM05D004167 ORTHO05D005012 4.0e-24 115.9 91 57.1
Haze_27280 Corylus avellana HOM05D004167 ORTHO05D005012 4.5e-23 112.5 155 41.3
TAR381G1570 Trochodendron aralioides HOM05D004167 ORTHO05D005012 4.5e-23 112.5 200 42.0
AUR62012082 Chenopodium quinoa HOM05D004167 ORTHO05D005012 2.9e-22 109.8 181 38.1
Actinidia13878 Actinidia chinensis HOM05D004167 ORTHO05D005012 4.9e-22 109.0 121 50.4
SMO142G0035 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 2.3e-19 100.1 116 46.6
Lj8A84T90 Lonicera japonica HOM05D004167 ORTHO05D005012 4.3e-18 95.9 96 52.1
Nitab4.5_0000065g0040 Nicotiana tabacum HOM05D004167 ORTHO05D005012 1.6e-17 94.0 104 49.0
EL10Ac3g06649 Beta vulgaris HOM05D004167 ORTHO05D005012 4.5e-15 85.9 74 60.8
EL10Ac8g19589 Beta vulgaris HOM05D004167 ORTHO05D005012 1.1e-13 81.3 89 47.2
EL10Ac2g03543 Beta vulgaris HOM05D004167 ORTHO05D005012 9.3e-13 78.2 74 52.7
Cfa024819 Carpinus fangiana HOM05D004167 ORTHO05D005012 6.0e-12 75.5 156 32.7
AagrBONN_evm.TU.Sc2ySwM_228.1008 Anthoceros agrestis HOM05D004063 ORTHO05D038441 2.5e-10 70.1 154 31.8
Pp3c23_20720 Physcomitrium patens HOM05D004063 ORTHO05D038441 4.5e-07 59.3 148 29.1
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 7.7e-07 58.5 140 33.6
CBR_g47101 Chara braunii HOM05D061628 ORTHO05D043951 7.7e-07 58.5 97 35.1
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 1.7e-06 57.4 139 33.8
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 2.9e-06 56.6 138 34.1
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 5.0e-06 55.8 109 32.1


User provided reference genes

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