Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 0.0e+00 1177.9 624 100.0
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 5.0e-69 266.5 596 31.2
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 2.2e-64 251.1 619 31.7
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 2.8e-64 250.8 412 41.3
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 1.4e-63 248.4 625 31.2
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.4e-63 248.4 410 38.3
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 7.0e-63 246.1 428 36.7
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 9.1e-63 245.7 623 30.8
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 9.1e-63 245.7 410 37.1
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 2.7e-62 244.2 410 39.5
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 2.7e-62 244.2 411 37.2
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 3.5e-62 243.8 416 37.0
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 5.9e-62 243.0 411 36.7
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 7.7e-62 242.7 411 37.5
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 2.2e-61 241.1 413 36.3
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 2.2e-61 241.1 410 38.0
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 3.8e-61 240.4 412 37.9
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 8.5e-61 239.2 416 36.8
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.5e-60 237.7 418 35.2
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 4.2e-60 236.9 413 38.3
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 7.2e-60 236.1 408 36.3
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 9.4e-60 235.7 410 35.9
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 2.7e-59 234.2 412 37.6
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 2.7e-59 234.2 427 37.7
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 3.6e-59 233.8 410 36.3
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 4.7e-59 233.4 413 37.5
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.0e-58 232.3 408 37.0
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.8e-58 231.5 410 37.1
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 1.8e-58 231.5 416 38.2
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.3e-58 231.1 411 35.0
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 3.0e-58 230.7 411 38.7
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 3.0e-58 230.7 416 36.5
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 4.0e-58 230.3 415 37.8
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.0e-58 230.3 410 36.8
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 5.2e-58 229.9 412 37.6
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 5.2e-58 229.9 410 36.6
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 5.2e-58 229.9 409 35.2
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 8.8e-58 229.2 410 35.9
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.2e-57 228.8 433 34.6
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 1.5e-57 228.4 420 37.1
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 1.5e-57 228.4 409 35.7
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 2.0e-57 228.0 409 36.9
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 2.0e-57 228.0 433 34.9
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 2.6e-57 227.6 410 36.3
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.4e-57 226.9 433 34.6
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 9.8e-57 225.7 415 37.3
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 9.8e-57 225.7 410 36.3
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 9.8e-57 225.7 415 36.1
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 9.8e-57 225.7 413 35.4
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 1.3e-56 225.3 420 36.4
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.7e-56 224.9 411 37.5
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.2e-56 224.6 410 36.1
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 2.2e-56 224.6 411 37.0
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 2.2e-56 224.6 419 34.4
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.8e-56 224.2 409 35.0
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 3.7e-56 223.8 575 30.8
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 4.9e-56 223.4 409 37.9
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 6.3e-56 223.0 413 36.6
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 8.3e-56 222.6 410 35.6
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 1.8e-55 221.5 413 36.3
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.1e-55 220.7 397 34.8
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.2e-54 218.8 419 37.5
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 2.0e-54 218.0 410 35.6
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 2.7e-54 217.6 369 37.7
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 2.7e-54 217.6 418 35.6
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 1.7e-53 214.9 437 35.5
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 2.3e-53 214.5 411 31.6
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 2.9e-53 214.2 412 36.2
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 3.8e-53 213.8 411 36.5
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 1.1e-52 212.2 433 34.2
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.1e-52 212.2 409 33.7
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 2.5e-52 211.1 402 37.3
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 5.6e-52 209.9 410 34.6
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.6e-51 208.4 422 33.6
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 3.6e-51 207.2 398 36.7
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 3.6e-51 207.2 410 34.1
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 6.1e-51 206.5 413 34.6
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 1.0e-50 205.7 402 35.8
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.8e-50 204.9 415 37.1
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 4.0e-50 203.8 415 35.2
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 4.0e-50 203.8 369 37.1
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 6.8e-50 203.0 415 36.6
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 1.5e-49 201.8 413 34.4
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 2.0e-49 201.4 415 36.9
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 2.6e-49 201.1 415 36.4
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 7.5e-49 199.5 415 36.6
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 7.5e-49 199.5 409 34.7
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 9.8e-49 199.1 431 32.7
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 9.8e-49 199.1 417 35.0
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 9.8e-49 199.1 415 34.9
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.3e-48 198.7 409 35.0
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 1.7e-48 198.4 538 29.9
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.2e-48 198.0 412 36.2
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.8e-47 194.9 432 34.7
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 4.1e-47 193.7 409 34.0
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 5.4e-47 193.4 409 34.7
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 5.4e-47 193.4 409 34.0
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 5.9e-46 189.9 444 33.8
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.7e-45 188.3 408 34.1
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 5.0e-45 186.8 413 34.9
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 4.3e-44 183.7 329 38.9
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 5.6e-44 183.3 407 32.2
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 2.5e-36 157.9 417 26.4
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 9.5e-36 156.0 216 39.8
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.1e-34 152.5 300 36.0
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 3.4e-33 147.5 270 34.1
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 4.9e-32 143.7 201 38.8
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 8.3e-32 142.9 191 39.3
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 2.4e-31 141.4 178 41.6
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 5.6e-28 130.2 249 34.1
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.4e-26 125.6 239 38.9
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.4e-23 115.5 219 36.5
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.1e-20 105.9 169 39.6
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.3e-20 104.4 167 37.7
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 4.3e-20 104.0 166 41.6
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 5.6e-20 103.6 171 37.4
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.6e-19 102.1 421 24.9
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 8.1e-19 99.8 168 39.9
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 8.1e-19 99.8 160 37.5
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 4.0e-18 97.4 153 39.2
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 6.4e-16 90.1 129 45.0
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 5.4e-15 87.0 129 39.5
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 3.1e-10 71.2 146 35.6
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.9e-08 64.7 132 31.8
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 8.4e-08 63.2 128 35.2
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 8.4e-08 63.2 152 30.3


User provided reference genes

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