Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 0.0e+00 1471.1 779 100.0
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 4.0e-140 503.1 728 43.3
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 8.0e-133 478.8 556 48.9
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 3.0e-132 476.9 558 48.2
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.5e-131 474.6 558 48.2
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 2.6e-131 473.8 733 43.7
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 2.0e-128 464.2 551 47.9
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 3.8e-127 459.9 556 48.0
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 1.5e-126 458.0 585 47.9
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 1.5e-126 458.0 552 47.3
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 2.5e-126 457.2 563 47.2
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 5.6e-126 456.1 558 47.3
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 1.2e-125 454.9 653 43.0
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 1.6e-125 454.5 560 47.1
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 1.6e-125 454.5 588 45.6
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 1.6e-125 454.5 555 48.1
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 4.7e-125 453.0 554 46.4
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 6.1e-125 452.6 560 46.4
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 6.1e-125 452.6 561 47.6
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 8.0e-125 452.2 560 46.8
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 8.0e-125 452.2 554 46.9
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 1.0e-124 451.8 561 45.8
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 1.4e-124 451.4 560 48.4
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 1.8e-124 451.1 556 46.0
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 2.3e-124 450.7 561 46.3
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 3.0e-124 450.3 561 45.6
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 3.0e-124 450.3 561 47.4
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 4.0e-124 449.9 559 47.2
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 4.0e-124 449.9 558 47.5
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 8.9e-124 448.7 561 47.4
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 8.9e-124 448.7 551 46.6
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 1.2e-123 448.4 553 47.6
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 2.0e-123 447.6 562 47.5
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.0e-123 447.6 559 45.6
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 2.6e-123 447.2 559 45.8
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 2.6e-123 447.2 560 46.1
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 2.6e-123 447.2 558 47.0
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 2.6e-123 447.2 566 45.8
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.4e-123 446.8 563 46.2
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 4.4e-123 446.4 577 46.4
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.7e-123 446.0 560 46.1
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 5.7e-123 446.0 557 47.2
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 7.5e-123 445.7 559 46.2
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 9.8e-123 445.3 557 46.7
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 9.8e-123 445.3 565 47.1
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 9.8e-123 445.3 594 45.6
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 9.8e-123 445.3 557 45.6
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 1.3e-122 444.9 563 46.0
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.3e-122 444.9 563 45.8
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.3e-122 444.9 554 46.8
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 1.7e-122 444.5 560 45.9
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 2.2e-122 444.1 556 46.4
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.2e-122 444.1 563 45.8
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 2.2e-122 444.1 563 45.8
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 2.9e-122 443.7 560 46.6
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 2.9e-122 443.7 561 47.4
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 2.9e-122 443.7 556 46.4
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 3.7e-122 443.4 559 45.6
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 4.9e-122 443.0 562 46.3
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 8.3e-122 442.2 572 46.2
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 8.3e-122 442.2 563 45.8
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 1.1e-121 441.8 557 47.0
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.1e-121 441.8 552 45.5
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 1.4e-121 441.4 554 45.1
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 1.4e-121 441.4 553 45.8
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.4e-121 441.4 556 46.0
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 1.4e-121 441.4 554 46.0
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 1.8e-121 441.0 553 46.1
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.8e-121 441.0 561 45.3
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 1.8e-121 441.0 661 42.5
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 4.1e-121 439.9 555 46.5
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 4.1e-121 439.9 554 45.8
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 4.1e-121 439.9 554 45.8
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 5.4e-121 439.5 581 44.1
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 5.4e-121 439.5 557 46.7
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 7.0e-121 439.1 556 46.0
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 9.2e-121 438.7 547 45.9
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 1.2e-120 438.3 552 45.7
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 1.2e-120 438.3 556 46.4
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.7e-120 437.2 556 45.7
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 2.7e-120 437.2 575 44.2
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 2.7e-120 437.2 559 45.4
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 3.5e-120 436.8 552 45.5
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 4.6e-120 436.4 653 41.8
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 4.6e-120 436.4 653 41.8
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 4.6e-120 436.4 668 43.7
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 5.9e-120 436.0 642 42.7
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 5.9e-120 436.0 552 45.3
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 5.9e-120 436.0 552 45.3
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 1.0e-119 435.3 662 43.8
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 1.7e-119 434.5 561 46.3
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 1.7e-119 434.5 559 45.6
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 3.9e-119 433.3 560 45.9
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 1.1e-118 431.8 557 44.7
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.5e-118 431.4 560 46.8
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 2.5e-118 430.6 525 48.6
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 4.3e-118 429.9 567 44.6
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 4.3e-118 429.9 665 41.8
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 3.6e-117 426.8 674 42.6
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 4.7e-117 426.4 639 41.8
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 8.0e-117 425.6 557 45.2
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 1.4e-116 424.9 638 41.7
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 2.3e-116 424.1 557 45.6
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 5.2e-116 422.9 647 42.3
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 6.8e-116 422.5 560 45.5
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 5.8e-115 419.5 561 45.8
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 9.8e-115 418.7 561 45.6
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 1.3e-114 418.3 563 45.1
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 3.5e-112 410.2 556 43.2
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 4.6e-112 409.8 560 44.5
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 9.5e-110 402.1 561 42.4
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 1.8e-108 397.9 521 46.4
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 4.0e-108 396.7 686 38.5
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 6.4e-106 389.4 559 43.5
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 6.0e-104 382.9 499 45.5
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 1.7e-103 381.3 561 43.1
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 3.9e-103 380.2 496 43.3
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.1e-101 374.4 561 42.6
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 1.8e-100 371.3 426 46.0
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 2.3e-100 370.9 553 41.4
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 6.8e-100 369.4 439 47.8
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 3.8e-98 363.6 503 43.7
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 5.4e-97 359.8 472 45.6
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 3.0e-95 354.0 554 39.9
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 1.9e-94 351.3 356 52.8
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.2e-93 348.6 592 38.5
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 4.0e-92 343.6 356 51.4
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 5.2e-92 343.2 394 50.0
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 1.9e-89 334.7 341 52.2
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 5.6e-86 323.2 342 49.7
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 3.8e-82 310.5 352 48.0
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 9.6e-70 269.2 300 49.3
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 9.6e-70 269.2 300 49.3
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 4.5e-67 260.4 296 52.0
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 3.7e-61 240.7 408 41.2
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.4e-44 185.7 224 48.2
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 2.0e-27 128.6 378 32.0
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 1.2e-22 112.8 525 28.4
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 1.1e-20 106.3 148 43.9
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 7.2e-17 93.6 137 40.9
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 4.4e-14 84.3 60 65.0
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 4.1e-12 77.8 59 61.0
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.7e-11 75.1 87 43.7
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.2e-06 59.7 55 49.1


User provided reference genes

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