Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g10951 Chara braunii HOM05D008075 ORTHO05D010208 0.0e+00 3086.6 2181 100.0
CBR_g31168 Chara braunii HOM05D008075 ORTHO05D010208 6.0e-45 188.3 808 27.1
SMO266G0073 Selaginella moellendorffii HOM05D008075 ORTHO05D010208 2.2e-15 90.1 146 36.3
Pp3c16_21630 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.9e-14 87.0 168 32.1
Pp3c6_3110 Physcomitrium patens HOM05D008075 ORTHO05D010208 7.2e-14 85.1 161 29.8
Ciclev10024878m.g Citrus clementina HOM05D008075 ORTHO05D010208 1.0e-12 81.3 150 32.0
Aqoxy2G00609 Aquilegia oxysepala HOM05D008075 ORTHO05D010208 4.0e-12 79.3 148 30.4
TAR376G0152 Trochodendron aralioides HOM05D008075 ORTHO05D010208 6.7e-12 78.6 149 30.2
ECA233G5565 Erigeron canadensis HOM05D008075 ORTHO05D010208 8.8e-12 78.2 139 33.1
Sc09g0004370 Simmondsia chinensis HOM05D008075 ORTHO05D010208 1.2e-11 77.8 151 28.5
Lsat_1_v5_gn_5_69300 Lactuca sativa HOM05D008075 ORTHO05D010208 2.0e-11 77.0 139 30.9
SEGI_31365 Sequoiadendron giganteum HOM05D008075 ORTHO05D010208 2.0e-11 77.0 140 33.6
Manes.12G084200 Manihot esculenta HOM05D008075 ORTHO05D010208 2.6e-11 76.6 137 32.8
Mapoly0089s0038 Marchantia polymorpha HOM05D008075 ORTHO05D010208 2.6e-11 76.6 152 32.9
Sabra04G0092100 Salix brachista HOM05D008075 ORTHO05D010208 2.6e-11 76.6 135 31.1
CiPaw.03G254600 Carya illinoinensis HOM05D008075 ORTHO05D010208 5.7e-11 75.5 164 28.7
Nn1g08564 Nelumbo nucifera HOM05D008075 ORTHO05D010208 5.7e-11 75.5 156 28.2
Solyc08g080000.3 Solanum lycopersicum HOM05D008075 ORTHO05D010208 7.5e-11 75.1 161 31.1
MBI03_g11141_MAGBIO Magnolia biondii HOM05D008075 ORTHO05D010208 9.7e-11 74.7 149 28.2
Nn5g27987 Nelumbo nucifera HOM05D008075 ORTHO05D010208 1.3e-10 74.3 132 28.8
Cc02_g33950 Coffea canephora HOM05D008075 ORTHO05D010208 2.2e-10 73.6 161 31.7
Potri.004G140000 Populus trichocarpa HOM05D008075 ORTHO05D010208 2.2e-10 73.6 135 30.4
Sopen08g028360 Solanum pennellii HOM05D008075 ORTHO05D010208 2.2e-10 73.6 161 31.1
Ah.06g191710 Amaranthus hybridus HOM05D008075 ORTHO05D010208 2.8e-10 73.2 135 28.9
Lj4g0013275 Lotus japonicus HOM05D008075 ORTHO05D010208 3.7e-10 72.8 137 33.6
AUR62039042 Chenopodium quinoa HOM05D008075 ORTHO05D010208 1.1e-09 71.2 133 30.1
Medtr8g095160 Medicago truncatula HOM05D008075 ORTHO05D010208 1.1e-09 71.2 141 32.6
Psat7g041720 Pisum sativum HOM05D008075 ORTHO05D010208 1.1e-09 71.2 140 30.7
GSVIVG01022404001 Vitis vinifera HOM05D008075 ORTHO05D010208 1.1e-09 71.2 157 28.0
Dinv08171 Davidia involucrata HOM05D008075 ORTHO05D010208 1.4e-09 70.9 167 28.7
Glyma.05G197100 Glycine max HOM05D008075 ORTHO05D010208 1.4e-09 70.9 141 30.5
TWI75G0788 Tripterygium wilfordii HOM05D008075 ORTHO05D010208 1.4e-09 70.9 138 31.2
Peaxi162Scf00658g00065 Petunia axillaris HOM05D008075 ORTHO05D010208 1.8e-09 70.5 138 31.9
Oeu011019.1 Olea europaea HOM05D002427 ORTHO05D002818 2.4e-09 70.1 242 27.7
PSO170G3563 Papaver somniferum HOM05D008075 ORTHO05D010208 2.4e-09 70.1 160 30.0
PGSC0003DMG400022727 Solanum tuberosum HOM05D008075 ORTHO05D010208 2.4e-09 70.1 134 32.1
TPR.G33422 Trifolium pratense HOM05D008075 ORTHO05D010208 2.4e-09 70.1 141 30.5
PSO782G2813 Papaver somniferum HOM05D008075 ORTHO05D010208 3.1e-09 69.7 159 29.6
ATR0171G010 Amborella trichopoda HOM05D008075 ORTHO05D010208 4.1e-09 69.3 161 28.6
CSS0037312 Camellia sinensis var. sinensis HOM05D008075 ORTHO05D010208 4.1e-09 69.3 132 31.8
Ca_17596_v3 Cicer arietinum L. HOM05D000484 ORTHO05D010208 4.1e-09 69.3 139 30.2
Migut.H00807 Erythranthe guttata HOM05D008075 ORTHO05D010208 5.3e-09 68.9 144 31.2
Glyma.08G004500 Glycine max HOM05D008075 ORTHO05D010208 5.3e-09 68.9 144 31.9
Phvul.002G277500 Phaseolus vulgaris HOM05D008075 ORTHO05D010208 5.3e-09 68.9 142 29.6
arahy.Tifrunner.gnm1.ann1.F3CBX5 Arachis hypogaea HOM05D008075 ORTHO05D010208 7.0e-09 68.6 150 29.3
CBR_g70703 Chara braunii HOM05D008075 ORTHO05D010208 7.0e-09 68.6 108 38.0
Nitab4.5_0005586g0040 Nicotiana tabacum HOM05D008075 ORTHO05D010208 7.0e-09 68.6 135 32.6
HPP92_002184 Vanilla planifolia HOM05D008075 ORTHO05D010208 7.0e-09 68.6 137 29.9
VMungo0251G2353 Vigna mungo HOM05D008075 ORTHO05D010208 7.0e-09 68.6 143 28.7
Lalb_Chr12g0202841 Lupinus albus HOM05D008075 ORTHO05D010208 9.1e-09 68.2 136 30.9
QL10p040186 Quercus lobata HOM05D008075 ORTHO05D010208 1.2e-08 67.8 135 30.4
HanXRQChr15g0468991 Helianthus annuus HOM05D008075 ORTHO05D010208 2.0e-08 67.0 133 32.3
THA.LOC104819473 Tarenaya hassleriana HOM05D008075 ORTHO05D010208 2.7e-08 66.6 153 30.1
SGA_v2.0_scaffold54G19596 Striga asiatica HOM05D008075 ORTHO05D010208 3.5e-08 66.2 150 28.0
arahy.Tifrunner.gnm1.ann1.BIR6X5 Arachis hypogaea HOM05D008075 ORTHO05D010208 7.7e-08 65.1 135 29.6
Zm00001eb054280 Zea mays HOM05D008075 ORTHO05D010208 1.7e-07 63.9 142 28.2
Os03g0703300 Oryza sativa ssp. japonica HOM05D008075 ORTHO05D010208 2.9e-07 63.2 140 29.3
Pp3c6_900 Physcomitrium patens HOM05D008075 ORTHO05D010208 9.4e-06 58.2 101 35.6
Pp3c6_920 Physcomitrium patens HOM05D008075 ORTHO05D010208 9.4e-06 58.2 101 35.6


User provided reference genes

Program Settings