Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 6.5e-118 427.6 240 100.0
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 1.3e-12 77.8 114 37.7
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 1.3e-12 77.8 118 35.6
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 1.3e-12 77.8 152 32.2
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.7e-12 77.4 129 35.7
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 2.2e-12 77.0 135 34.1
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 2.8e-12 76.6 124 33.1
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 1.1e-11 74.7 108 33.3
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 1.1e-11 74.7 116 37.1
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 1.4e-11 74.3 150 32.0
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 1.4e-11 74.3 121 34.7
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 1.8e-11 73.9 111 34.2
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.8e-11 73.9 121 33.9
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 1.8e-11 73.9 118 35.6
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 3.1e-11 73.2 115 33.9
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 3.1e-11 73.2 129 32.6
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 3.1e-11 73.2 111 35.1
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 5.3e-11 72.4 111 33.3
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 5.3e-11 72.4 108 36.1
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 5.3e-11 72.4 115 30.4
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 6.9e-11 72.0 118 33.9
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 1.2e-10 71.2 111 33.3
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 1.2e-10 71.2 114 34.2
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.2e-10 71.2 119 32.8
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 1.5e-10 70.9 124 34.7
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 1.5e-10 70.9 113 35.4
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 2.0e-10 70.5 115 33.0
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 2.0e-10 70.5 115 31.3
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.0e-10 70.5 115 31.3
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.0e-10 70.5 115 31.3
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.0e-10 70.5 115 31.3
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.4e-10 69.7 112 32.1
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 3.4e-10 69.7 111 33.3
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.4e-10 69.7 115 30.4
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 4.5e-10 69.3 111 33.3
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 4.5e-10 69.3 166 30.7
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.9e-10 68.9 108 32.4
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 7.7e-10 68.6 122 32.8
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 1.0e-09 68.2 122 34.4
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.0e-09 68.2 112 33.9
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 1.0e-09 68.2 213 27.2
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 1.3e-09 67.8 122 33.6
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 1.3e-09 67.8 115 32.2
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 1.3e-09 67.8 114 34.2
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 1.3e-09 67.8 119 31.1
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 1.3e-09 67.8 123 34.1
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.3e-09 67.8 145 36.6
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 1.3e-09 67.8 127 33.1
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 1.7e-09 67.4 136 33.8
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 1.7e-09 67.4 111 33.3
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 2.2e-09 67.0 118 31.4
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 2.9e-09 66.6 115 30.4
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.9e-09 66.6 121 33.9
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 2.9e-09 66.6 174 31.6
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 3.8e-09 66.2 183 29.0
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 3.8e-09 66.2 178 29.8
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 5.0e-09 65.9 122 32.0
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 5.0e-09 65.9 122 32.0
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 5.0e-09 65.9 123 30.9
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 6.5e-09 65.5 113 31.9
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 6.5e-09 65.5 125 32.0
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 6.5e-09 65.5 124 32.3
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 6.5e-09 65.5 114 32.5
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 8.5e-09 65.1 169 27.2
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 1.1e-08 64.7 114 33.3
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 1.4e-08 64.3 111 32.4
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 1.4e-08 64.3 118 32.2
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 1.4e-08 64.3 149 30.9
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 1.9e-08 63.9 96 35.4
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 1.9e-08 63.9 117 31.6
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 1.9e-08 63.9 124 31.5
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 2.5e-08 63.5 115 29.6
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 3.2e-08 63.2 123 29.3
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 3.2e-08 63.2 164 30.5
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 4.2e-08 62.8 120 31.7
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 5.5e-08 62.4 123 29.3
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 5.5e-08 62.4 118 34.7
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 5.5e-08 62.4 106 33.0
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 7.2e-08 62.0 125 31.2
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.2e-07 61.2 169 27.8
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 1.2e-07 61.2 108 31.5
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 1.6e-07 60.8 104 31.7
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 2.1e-07 60.5 171 27.5
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 3.6e-07 59.7 146 28.8
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 8.0e-07 58.5 135 26.7
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 8.0e-07 58.5 203 26.1
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.0e-06 58.2 140 29.3
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 1.0e-06 58.2 99 32.3
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 1.4e-06 57.8 115 28.7
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.8e-06 57.4 118 29.7
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 2.3e-06 57.0 99 32.3
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 3.9e-06 56.2 217 27.2


User provided reference genes

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