Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR294230 Cardamine hirsuta HOM05D006134 ORTHO05D007671 2.4e-43 178.3 84 100.0
Aa31LG6G16690 Aethionema arabicum HOM05D006134 ORTHO05D007671 4.9e-20 100.9 64 75.0
Sp7g37280 Schrenkiella parvula HOM05D006134 ORTHO05D007671 8.3e-20 100.1 64 76.6
Thhalv10026572m.g Eutrema salsugineum HOM05D006134 ORTHO05D007671 1.9e-19 99.0 57 82.5
THA.LOC104807806 Tarenaya hassleriana HOM05D006134 ORTHO05D007671 3.2e-19 98.2 64 71.9
AT4G38495 Arabidopsis thaliana HOM05D006134 ORTHO05D007671 2.1e-18 95.5 65 73.8
Rhsim11G0193500 Rhododendron simsii HOM05D006134 ORTHO05D007671 2.7e-18 95.1 60 68.3
Manes.11G097800 Manihot esculenta HOM05D006134 ORTHO05D007671 1.0e-17 93.2 79 59.5
CSS0024749 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 1.3e-17 92.8 79 59.5
CSS0027024 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 1.3e-17 92.8 79 59.5
CSS0037732 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 1.3e-17 92.8 79 59.5
SGA_v2.0_scaffold207G41895 Striga asiatica HOM05D006134 ORTHO05D007671 1.3e-17 92.8 78 55.1
Glyma.11G156931 Glycine max HOM05D006134 ORTHO05D007671 1.7e-17 92.4 79 57.0
Peaxi162Scf00359g00813 Petunia axillaris HOM05D006134 ORTHO05D007671 2.3e-17 92.0 79 55.7
Carub.0007s0038 Capsella rubella HOM05D006134 ORTHO05D007671 3.0e-17 91.7 64 70.3
VMungo1080G1627 Vigna mungo HOM05D006134 ORTHO05D007671 3.0e-17 91.7 79 57.0
Lalb_Chr10g0093471 Lupinus albus HOM05D006134 ORTHO05D007671 3.9e-17 91.3 79 57.0
Lalb_Chr10g0093491 Lupinus albus HOM05D006134 ORTHO05D007671 3.9e-17 91.3 79 57.0
SGA_v2.0_scaffold80G25864 Striga asiatica HOM05D006134 ORTHO05D007671 3.9e-17 91.3 78 53.8
vmacro02291 Vaccinium macrocarpon HOM05D006134 ORTHO05D007671 3.9e-17 91.3 60 70.0
Phvul.005G034200 Phaseolus vulgaris HOM05D006134 ORTHO05D007671 5.1e-17 90.9 79 55.7
AUR62010905 Chenopodium quinoa HOM05D006134 ORTHO05D007671 6.6e-17 90.5 65 67.7
AUR62021421 Chenopodium quinoa HOM05D006134 ORTHO05D007671 6.6e-17 90.5 65 67.7
Haze_00699 Corylus avellana HOM05D006134 ORTHO05D007671 6.6e-17 90.5 79 57.0
Migut.N01297 Erythranthe guttata HOM05D006134 ORTHO05D007671 6.6e-17 90.5 64 64.1
Nitab4.5_0000101g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 6.6e-17 90.5 79 54.4
arahy.Tifrunner.gnm1.ann1.A6PCA1 Arachis hypogaea HOM05D006134 ORTHO05D007671 8.6e-17 90.1 79 55.7
Oeu055649.1 Olea europaea HOM05D006134 ORTHO05D007671 1.1e-16 89.7 64 64.1
Atru.chr9.1880 Acer truncatum HOM05D006134 ORTHO05D007671 1.5e-16 89.4 79 54.4
Ciclev10029589m.g Citrus clementina HOM05D006134 ORTHO05D007671 1.5e-16 89.4 79 54.4
CANSAT80G1040 Cannabis sativa HOM05D006134 ORTHO05D007671 1.9e-16 89.0 79 53.2
Cc02_g30030 Coffea canephora HOM05D006134 ORTHO05D007671 1.9e-16 89.0 65 66.2
Dinv21074 Davidia involucrata HOM05D006134 ORTHO05D007671 1.9e-16 89.0 79 57.0
Nitab4.5_0000890g0130 Nicotiana tabacum HOM05D006134 ORTHO05D007671 1.9e-16 89.0 60 65.0
Potri.016G127200 Populus trichocarpa HOM05D006134 ORTHO05D007671 1.9e-16 89.0 64 64.1
GSVIVG01023976001 Vitis vinifera HOM05D006134 ORTHO05D007671 1.9e-16 89.0 79 55.7
arahy.Tifrunner.gnm1.ann1.PD8D7M Arachis hypogaea HOM05D006134 ORTHO05D007671 2.5e-16 88.6 65 64.6
A01p00050 Brassica napus HOM05D006134 ORTHO05D007671 2.5e-16 88.6 68 69.1
A07p02890 Brassica napus HOM05D006134 ORTHO05D007671 2.5e-16 88.6 68 69.1
BraA01t00010Z Brassica rapa HOM05D006134 ORTHO05D007671 2.5e-16 88.6 68 69.1
BraA07t28089Z Brassica rapa HOM05D006134 ORTHO05D007671 2.5e-16 88.6 68 69.1
Ca_02756_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.5e-16 88.6 64 59.4
Ca_02758_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.5e-16 88.6 64 59.4
Lj6g0003235 Lotus japonicus HOM05D006134 ORTHO05D007671 3.3e-16 88.2 79 53.2
Medtr3g082190 Medicago truncatula HOM05D006134 ORTHO05D007671 3.3e-16 88.2 79 53.2
FvH4_5g23580 Fragaria vesca HOM05D006134 ORTHO05D007671 4.3e-16 87.8 78 52.6
FAN04G0013 Fragaria x ananassa HOM05D006134 ORTHO05D007671 4.3e-16 87.8 78 52.6
FAN08G0898 Fragaria x ananassa HOM05D006134 ORTHO05D007671 4.3e-16 87.8 78 52.6
FAN18G0426 Fragaria x ananassa HOM05D006134 ORTHO05D007671 4.3e-16 87.8 78 52.6
FAN18G3769 Fragaria x ananassa HOM05D006134 ORTHO05D007671 4.3e-16 87.8 78 52.6
Psat5g110600 Pisum sativum HOM05D006134 ORTHO05D007671 4.3e-16 87.8 79 53.2
Sabra16G0121200 Salix brachista HOM05D006134 ORTHO05D007671 4.3e-16 87.8 64 62.5
Sabra16G0122100 Salix brachista HOM05D006134 ORTHO05D007671 4.3e-16 87.8 64 62.5
Cpa.g.sc182.12 Carica papaya HOM05D006134 ORTHO05D007671 5.6e-16 87.4 79 55.7
Ca_17958_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 5.6e-16 87.4 65 61.5
FAN13G0082 Fragaria x ananassa HOM05D006134 ORTHO05D007671 5.6e-16 87.4 64 60.9
Lsat_1_v5_gn_1_25060 Lactuca sativa HOM05D006134 ORTHO05D007671 5.6e-16 87.4 65 64.6
RcHm_v2.0_Chr7g0212881 Rosa chinensis HOM05D006134 ORTHO05D007671 5.6e-16 87.4 78 52.6
BcaNung01304 Brassica carinata HOM05D006134 ORTHO05D007671 7.3e-16 87.0 67 68.7
C01p00090 Brassica napus HOM05D006134 ORTHO05D007671 7.3e-16 87.0 67 68.7
BolC1t00014H Brassica oleracea HOM05D006134 ORTHO05D007671 7.3e-16 87.0 67 68.7
CsaV3_2G009990 Cucumis sativus L. HOM05D006134 ORTHO05D007671 7.3e-16 87.0 79 54.4
Hund14365 Selenicereus undatus HOM05D006134 ORTHO05D007671 7.3e-16 87.0 65 63.1
EL10Ac9g21342 Beta vulgaris HOM05D006134 ORTHO05D007671 9.5e-16 86.7 65 64.6
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 9.5e-16 86.7 65 63.1
CAN.G181.11 Capsicum annuum HOM05D006134 ORTHO05D007671 1.2e-15 86.3 65 61.5
ClCG11G010360 Citrullus lanatus HOM05D006134 ORTHO05D007671 1.2e-15 86.3 79 54.4
MELO3C008634.2 Cucumis melo HOM05D006134 ORTHO05D007671 1.2e-15 86.3 79 54.4
PGSC0003DMG400020551 Solanum tuberosum HOM05D006134 ORTHO05D007671 1.6e-15 85.9 65 61.5
Duzib248G0743 Durio zibethinus HOM05D006134 ORTHO05D007671 2.1e-15 85.5 78 50.0
Solyc06g007480.3 Solanum lycopersicum HOM05D006134 ORTHO05D007671 2.1e-15 85.5 65 61.5
Sopen06g002390 Solanum pennellii HOM05D006134 ORTHO05D007671 2.1e-15 85.5 65 61.5
TAR628G0583 Trochodendron aralioides HOM05D006134 ORTHO05D007671 2.1e-15 85.5 79 57.0
BcaNung04221 Brassica carinata HOM05D006134 ORTHO05D007671 2.8e-15 85.1 68 64.7
TAR376G1190 Trochodendron aralioides HOM05D006134 ORTHO05D007671 2.8e-15 85.1 79 54.4
CiPaw.10G137600 Carya illinoinensis HOM05D006134 ORTHO05D007671 3.6e-15 84.7 65 64.6
HanXRQChr12g0383651 Helianthus annuus HOM05D006134 ORTHO05D007671 4.7e-15 84.3 65 60.0
Ca_02994_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 6.2e-15 84.0 59 61.0
COL.COLO4_32379 Corchorus olitorius HOM05D006134 ORTHO05D007671 8.1e-15 83.6 78 48.7
Nn6g31911 Nelumbo nucifera HOM05D006134 ORTHO05D007671 8.1e-15 83.6 79 53.2
unitig_52.g17376 Utricularia gibba HOM05D006134 ORTHO05D007671 8.1e-15 83.6 64 60.9
MSTRG.5438 Avicennia marina HOM05D006134 ORTHO05D007671 1.1e-14 83.2 64 59.4
Duzib052G0391 Durio zibethinus HOM05D006134 ORTHO05D007671 1.1e-14 83.2 78 50.0
Aqoxy5G01105 Aquilegia oxysepala HOM05D006134 ORTHO05D007671 1.4e-14 82.8 78 51.3
Oeu002964.1 Olea europaea HOM05D006134 ORTHO05D007671 1.4e-14 82.8 64 59.4
SalBow3G4511 Salvia bowleyana HOM05D006134 ORTHO05D007671 1.4e-14 82.8 64 57.8
Sed0025018 Sechium edule HOM05D006134 ORTHO05D007671 1.4e-14 82.8 79 51.9
Ah.01g023220 Amaranthus hybridus HOM05D006134 ORTHO05D007671 2.4e-14 82.0 65 60.0
QL11p052022 Quercus lobata HOM05D006134 ORTHO05D007671 2.4e-14 82.0 79 51.9
QL11p052248 Quercus lobata HOM05D006134 ORTHO05D007671 2.4e-14 82.0 79 51.9
PGR042G1126 Punica granatum HOM05D006134 ORTHO05D007671 3.1e-14 81.6 79 51.9
Thecc.02G130200 Theobroma cacao HOM05D006134 ORTHO05D007671 4.0e-14 81.3 78 48.7
Gohir.D01G010100 Gossypium hirsutum HOM05D006134 ORTHO05D007671 5.2e-14 80.9 64 57.8
Gorai.002G012200 Gossypium raimondii HOM05D006134 ORTHO05D007671 5.2e-14 80.9 64 57.8
HanXRQChr10g0314981 Helianthus annuus HOM05D006134 ORTHO05D007671 6.8e-14 80.5 65 58.5
TWI79G0531 Tripterygium wilfordii HOM05D006134 ORTHO05D007671 1.2e-13 79.7 65 64.6
ECA247G3382 Erigeron canadensis HOM05D006134 ORTHO05D007671 2.6e-13 78.6 65 56.9
Sc08g0002730 Simmondsia chinensis HOM05D006134 ORTHO05D007671 3.4e-13 78.2 64 60.9
Eucgr.F02572 Eucalyptus grandis HOM05D006134 ORTHO05D007671 5.8e-13 77.4 65 58.5
Gohir.A01G010500 Gossypium hirsutum HOM05D006134 ORTHO05D007671 5.8e-13 77.4 64 56.2
ATR0730G227 Amborella trichopoda HOM05D006134 ORTHO05D007671 1.7e-12 75.9 79 49.4
PSO210G5022 Papaver somniferum HOM05D006134 ORTHO05D007671 1.7e-12 75.9 65 58.5
CDE04G1640 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 2.2e-12 75.5 79 51.9
PSO170G0646 Papaver somniferum HOM05D006134 ORTHO05D007671 2.2e-12 75.5 65 58.5
CDE02G2427 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 6.4e-12 73.9 79 50.6
SHI24498 Sapria himalayana HOM05D006134 ORTHO05D007671 6.4e-12 73.9 60 56.7
AL7G10360 Arabidopsis lyrata HOM05D006134 ORTHO05D007671 1.1e-11 73.2 60 66.7
Dinv31631 Davidia involucrata HOM05D006134 ORTHO05D007671 7.1e-11 70.5 74 52.7
Zm00001eb420290 Zea mays HOM05D006134 ORTHO05D007671 6.0e-10 67.4 65 50.8
AUR62013003 Chenopodium quinoa HOM05D006134 ORTHO05D007671 7.8e-10 67.0 42 73.8
Os04g0274400 Oryza sativa ssp. japonica HOM05D006134 ORTHO05D007671 1.3e-09 66.2 65 50.8
MD12G1003500 Malus domestica HOM05D006134 ORTHO05D007671 1.7e-09 65.9 42 71.4
AUR62010013 Chenopodium quinoa HOM05D006134 ORTHO05D007671 3.0e-09 65.1 42 71.4
Mapoly0028s0104 Marchantia polymorpha HOM05D006134 ORTHO05D007671 3.9e-09 64.7 62 48.4
Sed0020335 Sechium edule HOM05D006134 ORTHO05D007671 6.6e-09 63.9 79 41.8
AUR62015152 Chenopodium quinoa HOM05D006134 ORTHO05D007671 1.5e-08 62.8 42 69.0
SMO367G0732 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 4.3e-08 61.2 58 53.4
Pp3c14_10610 Physcomitrium patens HOM05D006134 ORTHO05D007671 7.3e-08 60.5 62 46.8
Pp3c14_10611 Physcomitrium patens HOM05D006134 ORTHO05D007671 7.3e-08 60.5 62 46.8
HanXRQChr07g0198481 Helianthus annuus HOM05D006134 ORTHO05D007671 5.2e-06 54.3 40 62.5


User provided reference genes

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