Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR293990 Cardamine hirsuta HOM05D008002 ORTHO05D010148 8.6e-75 283.5 136 100.0
Carub.0007s0013 Capsella rubella HOM05D008002 ORTHO05D010148 4.2e-53 211.5 136 77.9
AL7G10120 Arabidopsis lyrata HOM05D008002 ORTHO05D010148 2.1e-52 209.1 139 79.1
Sp7g37530 Schrenkiella parvula HOM05D008002 ORTHO05D010148 6.0e-52 207.6 144 75.7
AT4G38213 Arabidopsis thaliana HOM05D008002 ORTHO05D010148 8.7e-51 203.8 141 74.5
Thhalv10027398m.g Eutrema salsugineum HOM05D008002 ORTHO05D010148 2.9e-46 188.7 146 70.5
Thecc.02G147800 Theobroma cacao HOM05D008002 ORTHO05D010148 6.0e-28 127.9 172 45.3
Duzib248G0441 Durio zibethinus HOM05D008002 ORTHO05D010148 7.9e-28 127.5 176 44.9
MD05G1143100 Malus domestica HOM05D008002 ORTHO05D010148 3.9e-27 125.2 167 46.7
Potri.004G208200 Populus trichocarpa HOM05D008002 ORTHO05D010148 1.9e-26 122.9 160 43.8
Potri.009G169400 Populus trichocarpa HOM05D008002 ORTHO05D010148 1.9e-26 122.9 112 56.2
TAR376G1088 Trochodendron aralioides HOM05D008002 ORTHO05D010148 1.9e-26 122.9 162 44.4
Sabra04G0140100 Salix brachista HOM05D008002 ORTHO05D010148 3.3e-26 122.1 164 43.9
Actinidia17988 Actinidia chinensis HOM05D008002 ORTHO05D010148 9.7e-26 120.6 154 44.8
Duzib132G1147 Durio zibethinus HOM05D008002 ORTHO05D010148 9.7e-26 120.6 131 49.6
GSVIVG01023858001 Vitis vinifera HOM05D008002 ORTHO05D010148 1.3e-25 120.2 117 53.0
Prupe.8G181900 Prunus persica HOM05D008002 ORTHO05D010148 2.2e-25 119.4 165 45.5
CiPaw.05G094700 Carya illinoinensis HOM05D008002 ORTHO05D010148 4.8e-25 118.2 122 50.0
FvH4_2g17020 Fragaria vesca HOM05D008002 ORTHO05D010148 1.1e-24 117.1 174 41.4
FAN24G1487 Fragaria x ananassa HOM05D008002 ORTHO05D010148 1.1e-24 117.1 174 41.4
Gohir.D02G193300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.1e-24 117.1 173 41.6
FAN15G1289 Fragaria x ananassa HOM05D008002 ORTHO05D010148 1.4e-24 116.7 174 40.8
Actinidia20583 Actinidia chinensis HOM05D008002 ORTHO05D010148 1.8e-24 116.3 155 45.8
Gorai.012G138300 Gossypium raimondii HOM05D008002 ORTHO05D010148 2.4e-24 115.9 172 42.4
TWI75G0824 Tripterygium wilfordii HOM05D008002 ORTHO05D010148 2.4e-24 115.9 110 54.5
Nn8g40377 Nelumbo nucifera HOM05D008002 ORTHO05D010148 3.1e-24 115.5 166 41.0
Gohir.A03G170200 Gossypium hirsutum HOM05D008002 ORTHO05D010148 6.9e-24 114.4 174 40.8
Gohir.D04G151600 Gossypium hirsutum HOM05D008002 ORTHO05D010148 9.0e-24 114.0 128 47.7
RcHm_v2.0_Chr6g0281201 Rosa chinensis HOM05D008002 ORTHO05D010148 9.0e-24 114.0 150 44.0
FAN27G2383 Fragaria x ananassa HOM05D008002 ORTHO05D010148 1.2e-23 113.6 174 40.2
CiPaw.06G114200 Carya illinoinensis HOM05D008002 ORTHO05D010148 1.5e-23 113.2 166 44.0
Gorai.005G216100 Gossypium raimondii HOM05D008002 ORTHO05D010148 2.0e-23 112.8 174 40.8
Rhsim11G0198500 Rhododendron simsii HOM05D008002 ORTHO05D010148 2.6e-23 112.5 86 59.3
Gohir.A04G111300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 5.9e-23 111.3 172 41.3
MD10G1142900 Malus domestica HOM05D008002 ORTHO05D010148 5.9e-23 111.3 121 52.1
Nn2g12628 Nelumbo nucifera HOM05D008002 ORTHO05D010148 7.6e-23 110.9 167 40.1
QL11p056798 Quercus lobata HOM05D000114 ORTHO05D009898 1.0e-22 110.5 144 46.5
Haze_01959 Corylus avellana HOM05D008002 ORTHO05D010148 1.7e-22 109.8 158 41.1
PGR142G3621 Punica granatum HOM05D008002 ORTHO05D010148 1.7e-22 109.8 177 42.9
Atru.chr5.3576 Acer truncatum HOM05D008002 ORTHO05D010148 2.2e-22 109.4 160 42.5
Dinv14183 Davidia involucrata HOM05D008002 ORTHO05D010148 2.9e-22 109.0 167 41.9
Hund00100 Selenicereus undatus HOM05D008002 ORTHO05D010148 2.9e-22 109.0 161 44.7
CANSAT25G0111 Cannabis sativa HOM05D008002 ORTHO05D010148 3.8e-22 108.6 119 49.6
COL.COLO4_03847 Corchorus olitorius HOM05D008002 ORTHO05D010148 3.8e-22 108.6 180 39.4
Lsat_1_v5_gn_3_48401 Lactuca sativa HOM05D008002 ORTHO05D010148 8.5e-22 107.5 116 47.4
MELO3C015697.2 Cucumis melo HOM05D008002 ORTHO05D010148 7.2e-21 104.4 76 61.8
CsaV3_7G002100 Cucumis sativus L. HOM05D008002 ORTHO05D010148 7.2e-21 104.4 76 61.8
Gohir.D13G057750 Gossypium hirsutum HOM05D008002 ORTHO05D010148 7.2e-21 104.4 128 46.1
Oeu006116.1 Olea europaea HOM05D008002 ORTHO05D010148 2.1e-20 102.8 121 46.3
Sed0014792 Sechium edule HOM05D008002 ORTHO05D010148 3.6e-20 102.1 114 48.2
Gorai.013G065000 Gossypium raimondii HOM05D008002 ORTHO05D010148 4.6e-20 101.7 128 44.5
Cfa005392 Carpinus fangiana HOM05D008002 ORTHO05D010148 1.1e-18 97.1 152 40.1
Eucgr.I01542 Eucalyptus grandis HOM05D008002 ORTHO05D010148 1.5e-18 96.7 119 46.2
Eucgr.H05000 Eucalyptus grandis HOM05D008002 ORTHO05D010148 9.7e-18 94.0 120 44.2
Sc08g0002060 Simmondsia chinensis HOM05D008002 ORTHO05D010148 2.8e-17 92.4 77 53.2
Ciclev10029829m.g Citrus clementina HOM05D008002 ORTHO05D010148 8.2e-17 90.9 115 44.3
Haze_01969 Corylus avellana HOM05D008002 ORTHO05D010148 1.4e-16 90.1 136 39.0
SEGI_35818 Sequoiadendron giganteum HOM05D008002 ORTHO05D010148 1.4e-16 90.1 109 46.8
PSO541G1248 Papaver somniferum HOM05D008002 ORTHO05D010148 3.1e-16 89.0 97 47.4
CDE10G0514 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 9.1e-16 87.4 150 40.0
Aqoxy6G02976 Aquilegia oxysepala HOM05D008002 ORTHO05D010148 4.5e-15 85.1 130 42.3
Os08g0512100 Oryza sativa ssp. japonica HOM05D008002 ORTHO05D010148 6.1e-12 74.7 108 39.8
Zm00001eb035270 Zea mays HOM05D008002 ORTHO05D010148 1.0e-11 73.9 102 41.2
HanXRQChr15g0490081 Helianthus annuus HOM05D008002 ORTHO05D010148 1.7e-09 66.6 76 47.4
TAR628G1479 Trochodendron aralioides HOM05D008002 ORTHO05D010148 2.2e-09 66.2 77 46.8
MBI12_g13710_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 6.3e-09 64.7 75 49.3
CSS0003373 Camellia sinensis var. sinensis HOM05D008002 ORTHO05D010148 1.4e-08 63.5 86 41.9
MBI03_g24838_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 1.8e-08 63.2 74 48.6
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 1.8e-08 63.2 75 48.0
ClCG02G003270 Citrullus lanatus HOM05D008002 ORTHO05D010148 2.4e-08 62.8 41 68.3
MBI18_g48147_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 4.1e-08 62.0 76 47.4
ATR0763G180 Amborella trichopoda HOM05D008002 ORTHO05D010148 2.0e-07 59.7 75 44.0
CDE10G0941 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 2.6e-07 59.3 80 43.8
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 4.5e-07 58.5 56 48.2
PSO675G9248 Papaver somniferum HOM05D008002 ORTHO05D010148 5.9e-07 58.2 58 51.7
HPP92_007470 Vanilla planifolia HOM05D008002 ORTHO05D010148 3.8e-06 55.5 99 37.4
HanXRQChr15g0479771 Helianthus annuus HOM05D008002 ORTHO05D010148 6.5e-06 54.7 41 53.7


User provided reference genes

Program Settings