Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.7e-194 682.6 371 100.0
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 6.0e-187 657.5 371 94.9
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 7.3e-185 650.6 371 93.5
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 2.8e-184 648.7 371 94.1
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.2e-182 643.3 371 93.3
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 3.2e-180 635.2 371 92.5
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 3.3e-177 625.2 371 90.6
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 3.3e-177 625.2 371 90.6
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.6e-176 622.9 371 90.3
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 6.2e-176 620.9 370 90.8
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 8.1e-176 620.5 371 89.8
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 8.1e-176 620.5 371 89.8
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.8e-175 619.4 371 89.8
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 4.0e-175 618.2 371 89.5
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 2.0e-174 615.9 371 88.9
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 3.4e-174 615.1 371 89.2
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 4.4e-174 614.8 371 88.7
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 2.2e-173 612.5 373 89.5
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 8.4e-173 610.5 369 90.0
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 8.4e-173 610.5 369 90.0
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-172 610.1 369 90.5
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 6.0e-171 604.4 371 88.7
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 8.7e-170 600.5 369 88.3
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 4.3e-169 598.2 369 87.5
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 3.2e-156 555.4 371 81.7
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-141 506.9 296 91.9
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 9.4e-140 500.7 367 75.7
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 6.1e-139 498.0 366 75.4
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 1.1e-137 493.8 366 73.8
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 8.2e-136 487.6 368 74.5
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 8.2e-136 487.6 371 73.0
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.4e-135 486.9 370 73.0
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 2.0e-134 483.0 374 73.8
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.0e-133 480.7 370 72.7
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 5.0e-133 478.4 374 72.5
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.4e-132 476.9 344 76.5
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 2.5e-132 476.1 373 70.2
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 3.2e-132 475.7 356 75.3
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 4.2e-132 475.3 372 72.0
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 5.5e-132 474.9 367 72.8
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 7.2e-132 474.6 372 71.8
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 9.4e-132 474.2 369 71.5
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 9.4e-132 474.2 344 76.5
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.2e-131 473.8 381 70.6
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 2.7e-131 472.6 378 68.8
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 3.6e-131 472.2 317 83.9
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.6e-131 472.2 355 75.2
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 4.7e-131 471.9 355 75.8
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 6.1e-131 471.5 374 71.4
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 6.1e-131 471.5 373 71.6
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 6.1e-131 471.5 376 68.9
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 7.9e-131 471.1 359 71.3
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.4e-130 470.3 349 75.6
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.8e-130 469.9 369 71.8
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.9e-130 468.8 348 75.6
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 6.7e-130 468.0 372 70.7
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 6.7e-130 468.0 374 69.5
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 6.7e-130 468.0 376 68.1
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.1e-129 467.2 363 72.5
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 2.6e-129 466.1 375 70.9
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 2.6e-129 466.1 361 71.2
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 7.4e-129 464.5 372 69.1
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.3e-128 463.8 326 76.7
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 8.2e-128 461.1 344 73.5
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.4e-127 460.3 383 68.9
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 1.8e-127 459.9 371 70.4
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.4e-127 459.5 335 75.5
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 3.1e-127 459.1 373 71.0
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 7.0e-127 458.0 367 69.2
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.2e-126 457.2 373 69.4
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.2e-126 457.2 361 70.6
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.6e-126 456.8 372 72.0
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.0e-126 456.4 359 71.6
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 2.0e-126 456.4 333 75.7
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 2.0e-126 456.4 328 75.3
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 2.6e-126 456.1 326 75.8
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 7.7e-126 454.5 330 74.8
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.3e-125 453.8 367 69.8
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 2.9e-125 452.6 366 69.9
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 5.0e-125 451.8 377 68.7
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 5.0e-125 451.8 322 75.2
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 6.5e-125 451.4 347 72.6
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 6.5e-125 451.4 370 68.4
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 8.5e-125 451.1 331 73.7
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.1e-124 450.7 370 71.4
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 1.5e-124 450.3 366 69.4
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 3.2e-124 449.1 376 68.4
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 3.2e-124 449.1 366 69.4
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 3.2e-124 449.1 322 75.2
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 7.2e-124 448.0 338 72.2
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 9.4e-124 447.6 379 68.1
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.2e-123 447.2 333 75.7
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 2.1e-123 446.4 377 66.8
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.7e-123 446.0 348 70.7
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 2.7e-123 446.0 373 68.4
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 3.6e-123 445.7 346 70.5
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 8.0e-123 444.5 371 66.6
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 8.0e-123 444.5 322 74.2
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 8.0e-123 444.5 329 73.9
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.0e-122 444.1 370 67.3
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 1.0e-122 444.1 352 69.6
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.4e-122 443.7 362 68.8
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.8e-122 443.4 339 74.0
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 2.3e-122 443.0 345 71.9
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 4.0e-122 442.2 321 75.1
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 4.0e-122 442.2 367 64.0
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 5.2e-122 441.8 345 71.6
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 2.6e-121 439.5 362 68.5
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 3.3e-121 439.1 378 68.5
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.7e-120 436.8 362 68.2
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.7e-120 436.8 341 72.1
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.8e-120 435.3 290 82.1
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 4.8e-120 435.3 354 69.2
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 9.1e-119 431.0 375 65.3
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 8.5e-117 424.5 331 71.3
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 5.5e-116 421.8 371 66.8
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 4.4e-113 412.1 360 65.3
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 1.3e-112 410.6 368 63.3
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.4e-111 406.4 323 69.3
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 4.7e-107 392.1 378 60.3
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 1.2e-105 387.5 329 65.3
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 5.7e-105 385.2 369 62.3
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 1.3e-104 384.0 243 87.2
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 3.7e-104 382.5 348 61.8
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 3.5e-102 375.9 344 61.6
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.2e-97 360.9 391 55.2
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 1.6e-94 350.5 247 78.1
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.5e-94 349.4 346 58.7
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.9e-87 327.0 335 57.9
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.9e-87 327.0 297 58.9
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 9.5e-84 314.7 206 76.2
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.0e-82 309.3 322 55.6
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.0e-77 293.1 330 54.8
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 8.1e-75 285.0 324 54.3
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.4e-71 274.2 242 60.3
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 3.2e-55 219.9 208 58.7
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.1e-54 217.2 261 50.2
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 2.7e-46 190.3 144 66.0
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 2.8e-43 180.3 165 58.2
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 5.3e-42 176.0 130 70.8
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 4.2e-31 139.8 103 70.9
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-29 134.8 78 89.7
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 8.7e-29 132.1 90 70.0
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 1.8e-26 124.4 95 69.5
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-25 120.9 68 89.7
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.3e-24 118.2 128 50.8
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.4e-23 114.8 112 52.7
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 2.7e-22 110.5 95 62.1
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-20 104.8 67 80.6
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 3.3e-20 103.6 79 65.8
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 4.4e-20 103.2 144 44.4
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 1.8e-18 97.8 87 59.8
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.8e-18 97.8 81 67.9
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 4.5e-17 93.2 282 31.2
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 3.2e-15 87.0 314 31.2
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 2.7e-14 84.0 269 32.3
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 7.4e-12 75.9 63 65.1
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.1e-10 68.9 49 67.3
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 9.1e-10 68.9 59 57.6
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.2e-09 68.6 67 53.7
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-09 68.2 49 67.3
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 1.6e-09 68.2 177 34.5
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 2.0e-09 67.8 69 58.0
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.0e-09 67.8 49 63.3
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 5.9e-09 66.2 73 54.8
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.0e-08 65.5 50 64.0
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 6.5e-08 62.8 74 50.0
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.5e-08 62.8 49 63.3
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.9e-07 61.2 50 60.0
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 2.7e-06 57.4 43 67.4
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.7e-06 57.4 49 57.1
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.7e-06 57.4 72 51.4
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.7e-06 57.4 72 51.4
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 6.1e-06 56.2 67 68.7


User provided reference genes

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