Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR293560 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.5e-36 155.6 74 100.0
Carub.0003s3128 Capsella rubella HOM05D000209 ORTHO05D000129 7.3e-20 100.1 76 64.5
AT2G17310 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 5.3e-18 94.0 67 62.7
AL3G50200 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.5e-17 92.4 77 62.3
CARHR107440 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.5e-17 92.4 75 62.7
Thhalv10022098m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 2.2e-16 88.6 76 57.9
CARHR293580 Cardamine hirsuta HOM05D000209 ORTHO05D000129 8.4e-16 86.7 63 63.5
BcaB04g18961 Brassica carinata HOM05D000209 ORTHO05D000129 1.9e-15 85.5 76 55.3
BcaC01g03737 Brassica carinata HOM05D000209 ORTHO05D000129 1.9e-15 85.5 69 58.0
A09p11310 Brassica napus HOM05D000209 ORTHO05D000129 2.4e-15 85.1 56 62.5
BraA09t36769Z Brassica rapa HOM05D000209 ORTHO05D000129 2.4e-15 85.1 56 62.5
BcaC04g22980 Brassica carinata HOM05D000209 ORTHO05D000129 3.2e-15 84.7 56 60.7
BraA05t22041Z Brassica rapa HOM05D000209 ORTHO05D000129 3.2e-15 84.7 76 55.3
BcaC01g03735 Brassica carinata HOM05D000209 ORTHO05D000129 4.2e-15 84.3 76 55.3
BcaC05g28761 Brassica carinata HOM05D000209 ORTHO05D000129 9.3e-15 83.2 76 55.3
C05p48660 Brassica napus HOM05D000209 ORTHO05D000129 9.3e-15 83.2 76 55.3
BolC5t33601H Brassica oleracea HOM05D000209 ORTHO05D000129 9.3e-15 83.2 76 55.3
A03p40370 Brassica napus HOM05D000209 ORTHO05D000129 1.6e-14 82.4 76 55.3
BraA03t13187Z Brassica rapa HOM05D000209 ORTHO05D000129 1.6e-14 82.4 76 53.9
BraA03t13186Z Brassica rapa HOM05D000209 ORTHO05D000129 2.7e-14 81.6 69 56.5
A05p32120 Brassica napus HOM05D000209 ORTHO05D000129 3.5e-14 81.3 76 53.9
A03p40360 Brassica napus HOM05D000209 ORTHO05D000129 6.0e-14 80.5 69 53.6
AL3G28960 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.0e-13 79.7 69 58.0
AL3G28980 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.0e-13 79.7 69 58.0
Carub.0003s3132 Capsella rubella HOM05D000209 ORTHO05D000129 3.0e-13 78.2 76 56.6
AL2G24872 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.9e-13 77.8 70 54.3
CARHR107420 Cardamine hirsuta HOM05D000209 ORTHO05D000129 5.1e-13 77.4 73 58.9
C03p49150 Brassica napus HOM05D000209 ORTHO05D000129 6.7e-13 77.0 69 53.6
BolC3t17196H Brassica oleracea HOM05D000209 ORTHO05D000129 6.7e-13 77.0 69 53.6
Carub.0003s3133 Capsella rubella HOM05D000209 ORTHO05D000129 6.7e-13 77.0 75 57.3
Thhalv10015389m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 8.7e-13 76.6 74 56.8
A01p36440 Brassica napus HOM05D000209 ORTHO05D000129 1.5e-12 75.9 77 51.9
Carub.0003s1746 Capsella rubella HOM05D000209 ORTHO05D000129 1.5e-12 75.9 77 51.9
AL2G24874 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.9e-12 75.5 59 57.6
AL3G29400 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.3e-12 74.7 69 53.6
AT3G17710 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.3e-11 72.8 76 52.6
BcaB04g20801 Brassica carinata HOM05D000209 ORTHO05D000129 1.4e-10 69.3 72 45.8
BcaB06g25830 Brassica carinata HOM05D000209 ORTHO05D000129 1.8e-10 68.9 80 45.0
C01p46190 Brassica napus HOM05D000209 ORTHO05D000129 2.4e-10 68.6 74 48.6
BolC1t04581H Brassica oleracea HOM05D000209 ORTHO05D000129 2.4e-10 68.6 74 48.6
BcaB04g20802 Brassica carinata HOM05D000209 ORTHO05D000129 5.3e-10 67.4 77 46.8
BcaB04g20830 Brassica carinata HOM05D000209 ORTHO05D000129 3.4e-09 64.7 73 47.9
A01p36700 Brassica napus HOM05D000209 ORTHO05D000129 4.5e-09 64.3 72 48.6
C05p48750 Brassica napus HOM05D000209 ORTHO05D000129 4.5e-09 64.3 80 45.0
BolC5t33611H Brassica oleracea HOM05D000209 ORTHO05D000129 4.5e-09 64.3 80 45.0
BraA01t03733Z Brassica rapa HOM05D000209 ORTHO05D000129 4.5e-09 64.3 72 48.6
A05p32210 Brassica napus HOM05D000209 ORTHO05D000129 5.8e-09 63.9 80 45.0
BraA05t22051Z Brassica rapa HOM05D000209 ORTHO05D000129 5.8e-09 63.9 80 45.0
AT3G18340 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 7.6e-09 63.5 67 44.8
BcaC05g28768 Brassica carinata HOM05D000209 ORTHO05D000129 7.6e-09 63.5 74 45.9
BcaC09g48724 Brassica carinata HOM05D000209 ORTHO05D000129 1.0e-08 63.2 70 47.1
CARHR091750 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.0e-08 63.2 70 44.3
AT3G16555 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.7e-08 62.4 59 52.5
AT2G07120 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 2.2e-08 62.0 67 43.3
BcaC09g48733 Brassica carinata HOM05D000209 ORTHO05D000129 4.9e-08 60.8 72 43.1
BolC1t04609H Brassica oleracea HOM05D000209 ORTHO05D000129 4.9e-08 60.8 72 43.1
A01p36610 Brassica napus HOM05D000209 ORTHO05D000129 1.9e-07 58.9 72 43.1
BraA01t03726Z Brassica rapa HOM05D000209 ORTHO05D000129 1.9e-07 58.9 72 43.1
C01p46570 Brassica napus HOM05D000209 ORTHO05D000129 7.1e-07 57.0 67 44.8
BolC1t04622H Brassica oleracea HOM05D000209 ORTHO05D000129 7.1e-07 57.0 67 44.8
BraA01t03707Z Brassica rapa HOM05D002896 ORTHO05D003263 1.2e-06 56.2 57 52.6
BcaB04g18962 Brassica carinata HOM05D000209 ORTHO05D000129 3.5e-06 54.7 51 52.9


User provided reference genes

Program Settings