Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 3.1e-210 736.1 878 100.0
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 2.0e-180 637.1 878 93.4
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 8.1e-174 615.1 876 92.6
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 5.2e-173 612.5 876 91.8
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 1.9e-170 604.0 876 91.2
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 6.6e-168 595.5 878 92.1
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 3.8e-163 579.7 876 90.5
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 3.2e-162 576.6 876 90.2
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 3.2e-162 576.6 876 90.1
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 1.9e-159 567.4 878 89.1
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 1.8e-157 560.8 869 90.4
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 1.4e-149 534.6 878 88.5
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.2e-137 495.0 878 82.3
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 8.0e-97 359.4 749 91.5
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 4.1e-93 347.1 871 71.9
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 7.7e-92 342.8 866 73.9
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 5.0e-91 340.1 870 77.2
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 1.0e-88 332.4 868 74.9
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 3.4e-87 327.4 876 72.1
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 7.5e-87 326.2 878 71.6
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 7.0e-85 319.7 879 76.0
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 3.5e-84 317.4 867 76.1
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 1.0e-83 315.8 877 75.6
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 1.7e-83 315.1 867 76.8
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 5.0e-83 313.5 867 74.0
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 1.1e-82 312.4 874 65.1
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 1.9e-82 311.6 875 76.2
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 1.8e-80 305.1 880 69.8
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 5.2e-80 303.5 873 73.1
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.0e-79 301.6 866 76.0
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 1.3e-78 298.9 867 74.2
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 1.7e-78 298.5 867 75.8
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 2.2e-78 298.1 866 68.5
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 1.5e-74 285.4 868 75.3
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 3.3e-74 284.3 869 75.1
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 2.8e-73 281.2 871 71.6
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 2.3e-72 278.1 866 71.6
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 4.4e-71 273.9 866 71.4
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 9.8e-71 272.7 866 71.4
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 7.0e-69 266.5 874 70.6
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 2.0e-68 265.0 868 71.5
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 5.0e-67 260.4 878 69.5
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 5.0e-67 260.4 875 71.4
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.1e-65 255.0 868 71.5
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 8.9e-64 249.6 881 67.1
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 5.8e-63 246.9 869 68.7
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 2.9e-62 244.6 878 63.0
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 3.7e-62 244.2 873 72.5
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 5.4e-61 240.4 874 65.8
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 9.2e-61 239.6 875 67.8
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 3.5e-60 237.7 874 65.9
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 3.5e-60 237.7 873 63.0
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 4.6e-60 237.3 875 63.9
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 6.0e-60 236.9 872 68.8
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 5.1e-59 233.8 776 79.4
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 1.5e-58 232.3 374 68.2
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 1.6e-57 228.8 876 59.7
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 6.2e-57 226.9 875 71.1
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 2.3e-56 224.9 869 63.3
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 3.1e-56 224.6 883 61.8
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 8.9e-56 223.0 869 61.6
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 1.5e-55 222.2 868 68.5
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 2.0e-55 221.9 876 64.3
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 2.0e-55 221.9 876 64.3
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 3.4e-55 221.1 199 55.8
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 9.9e-55 219.5 866 63.9
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 1.7e-54 218.8 378 66.9
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.7e-54 218.8 362 68.2
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 3.7e-54 217.6 362 68.5
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 4.9e-54 217.2 892 67.0
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 6.4e-54 216.9 369 68.8
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 6.4e-54 216.9 369 68.0
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 1.9e-53 215.3 362 68.2
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 9.2e-53 213.0 859 65.9
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 3.5e-52 211.1 870 72.4
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 5.6e-50 203.8 877 67.6
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 9.5e-50 203.0 193 50.3
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 4.4e-47 194.1 349 67.3
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 7.6e-47 193.4 381 63.5
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 2.2e-46 191.8 372 64.2
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 2.9e-46 191.4 443 53.0
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 4.9e-46 190.7 339 69.3
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 8.4e-46 189.9 339 69.0
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 3.3e-42 177.9 366 63.9
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 3.3e-42 177.9 878 65.5
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 3.1e-40 171.4 174 48.9
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.4e-37 161.8 866 70.1
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.4e-37 161.8 406 48.3
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.6e-36 159.1 385 60.0
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 2.1e-36 158.7 381 59.8
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 1.0e-35 156.4 387 59.9
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 8.7e-35 153.3 829 65.7
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 2.1e-33 148.7 171 45.0
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 3.4e-31 141.4 890 52.5
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 7.1e-29 133.7 392 56.4
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 2.5e-26 125.2 194 36.6
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 2.5e-26 125.2 185 37.3
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 4.8e-25 120.9 197 37.6
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 2.2e-22 112.1 395 54.2
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 2.2e-22 112.1 144 39.6
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 2.3e-19 102.1 144 39.6
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.3e-19 102.1 147 42.9
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.1e-18 99.8 112 52.7
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 5.8e-15 87.4 95 46.3
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 7.6e-15 87.0 63 63.5
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 7.1e-13 80.5 101 44.6


User provided reference genes

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