Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 8.9e-187 656.8 322 100.0
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 7.5e-170 600.5 322 90.4
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 7.5e-170 600.5 322 90.4
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 7.1e-168 594.0 322 89.1
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 9.2e-168 593.6 322 88.8
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 1.0e-166 590.1 322 87.9
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.1e-166 587.8 322 88.2
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.1e-166 587.8 322 88.2
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.1e-166 587.8 322 88.2
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 3.3e-165 585.1 328 86.9
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 2.1e-164 582.4 322 86.6
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 6.2e-164 580.9 340 83.5
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 1.1e-163 580.1 328 86.0
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 6.2e-156 554.3 322 82.0
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 1.8e-155 552.7 335 80.9
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 1.0e-142 510.4 321 74.1
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 3.9e-142 508.4 320 75.0
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 1.9e-141 506.1 320 74.4
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 2.5e-141 505.8 322 74.8
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 4.3e-141 505.0 320 73.8
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 9.6e-141 503.8 322 73.9
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.3e-140 503.4 322 74.8
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 2.1e-140 502.7 320 73.8
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 8.1e-140 500.7 320 75.0
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 4.0e-139 498.4 336 71.1
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 6.9e-139 497.7 320 74.7
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.2e-138 496.9 320 74.1
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 2.6e-138 495.7 320 73.4
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 2.6e-138 495.7 322 73.6
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.4e-138 495.4 322 74.2
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 3.4e-138 495.4 322 73.9
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 3.4e-138 495.4 320 73.8
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.5e-138 495.0 322 73.9
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 5.8e-138 494.6 320 72.2
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.7e-137 493.0 322 73.0
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 3.8e-137 491.9 320 73.8
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 3.8e-137 491.9 319 73.4
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 6.4e-137 491.1 320 71.6
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 1.1e-136 490.3 320 73.4
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 3.2e-136 488.8 322 73.6
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 5.4e-136 488.0 322 72.4
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 7.1e-136 487.6 322 71.4
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 7.1e-136 487.6 322 71.4
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 7.1e-136 487.6 320 71.9
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 9.3e-136 487.3 320 72.2
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 9.3e-136 487.3 320 72.5
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 1.2e-135 486.9 320 73.4
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 1.2e-135 486.9 320 72.8
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 2.7e-135 485.7 322 71.4
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 2.7e-135 485.7 321 72.3
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 7.9e-135 484.2 322 71.7
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 7.9e-135 484.2 320 71.2
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 1.0e-134 483.8 321 73.2
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 1.0e-134 483.8 320 72.8
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.3e-134 482.6 320 71.2
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.3e-134 482.6 320 70.3
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 3.9e-134 481.9 316 72.2
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 3.9e-134 481.9 322 72.0
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 5.1e-134 481.5 320 72.2
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 5.1e-134 481.5 320 70.6
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 6.7e-134 481.1 320 72.2
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 1.1e-133 480.3 320 71.9
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.1e-133 480.3 319 72.4
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.5e-133 479.9 320 70.6
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 1.9e-133 479.6 320 70.6
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 2.5e-133 479.2 320 71.2
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 3.3e-133 478.8 328 70.4
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 4.3e-133 478.4 320 71.9
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 4.3e-133 478.4 320 70.3
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 5.6e-133 478.0 338 68.6
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 5.6e-133 478.0 321 72.6
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 7.4e-133 477.6 322 70.2
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 1.3e-132 476.9 299 74.6
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 1.6e-132 476.5 320 71.2
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 2.1e-132 476.1 320 70.0
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.1e-132 476.1 321 70.7
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 3.7e-132 475.3 320 70.6
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 4.8e-132 474.9 320 70.9
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 1.8e-131 473.0 318 71.1
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 2.4e-131 472.6 320 69.7
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 4.0e-131 471.9 320 68.1
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 1.2e-130 470.3 320 71.6
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.5e-130 469.9 320 70.0
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 7.6e-130 467.6 320 69.4
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.3e-129 466.8 324 69.1
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.7e-129 466.5 338 66.6
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 4.9e-129 464.9 327 70.3
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 3.2e-128 462.2 324 68.2
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 9.3e-128 460.7 349 64.8
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 4.6e-127 458.4 322 68.9
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 6.0e-127 458.0 322 68.3
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.8e-126 456.4 320 70.0
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 8.7e-126 454.1 291 73.9
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 4.3e-125 451.8 320 70.0
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 5.7e-125 451.4 322 68.3
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.6e-124 449.9 304 69.4
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.8e-123 446.4 320 67.8
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 5.3e-123 444.9 288 74.3
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 3.4e-122 442.2 320 66.9
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.0e-121 440.7 324 65.1
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 1.7e-121 439.9 320 65.6
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 2.2e-121 439.5 297 71.4
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 6.5e-121 438.0 321 65.7
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.9e-120 436.4 320 65.6
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 3.2e-120 435.6 320 64.4
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 9.3e-120 434.1 336 64.3
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 2.1e-119 433.0 321 65.4
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 1.3e-118 430.3 323 64.4
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 3.0e-118 429.1 322 64.0
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 3.9e-118 428.7 326 64.1
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 7.4e-117 424.5 323 63.8
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.4e-115 420.2 365 60.5
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.1e-115 418.7 323 63.5
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.1e-115 418.7 326 62.9
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 4.2e-112 408.7 321 62.3
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 3.6e-111 405.6 324 65.4
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.1e-111 404.8 343 59.5
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 3.3e-109 399.1 326 59.8
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 4.3e-109 398.7 347 59.1
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.3e-109 398.7 316 60.1
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 4.3e-109 398.7 272 71.7
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 3.7e-108 395.6 267 71.5
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 9.4e-104 380.9 322 60.9
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 1.0e-102 377.5 322 59.6
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 4.1e-99 365.5 319 55.5
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.2e-97 359.8 318 54.7
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.2e-97 359.8 318 54.7
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 8.5e-97 357.8 322 58.1
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 4.8e-92 342.0 316 52.5
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 4.8e-84 315.5 213 69.0
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 6.3e-84 315.1 324 51.2
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 9.2e-67 258.1 198 65.7
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.8e-62 243.8 155 74.2
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 4.4e-61 239.2 155 71.0
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 1.3e-60 237.7 155 71.6
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 5.6e-56 222.2 155 67.7
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 3.1e-54 216.5 144 70.8
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 6.9e-22 109.0 72 70.8
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 6.4e-20 102.4 57 77.2
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 2.1e-18 97.4 63 69.8
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 2.7e-18 97.1 63 69.8
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.0e-17 95.1 63 68.3
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-17 94.7 71 60.6
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 7.4e-16 89.0 73 57.5
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 4.5e-13 79.7 244 25.0
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 7.6e-13 79.0 56 60.7
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-12 78.2 54 66.7
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 1.9e-08 64.3 52 50.0
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.8e-07 60.5 42 64.3
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.8e-06 57.8 239 27.2
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.8e-06 57.8 43 60.5
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.1e-06 56.6 38 65.8
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.0e-06 55.5 41 61.0


User provided reference genes

Program Settings