Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 2.3e-193 678.7 341 100.0
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 1.1e-171 606.7 342 89.8
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.2e-170 603.2 341 89.1
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 1.2e-168 596.7 342 87.7
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 1.7e-167 592.8 344 88.4
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 8.3e-167 590.5 343 86.9
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 3.1e-166 588.6 344 87.5
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 9.1e-166 587.0 344 87.8
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 1.0e-164 583.6 344 86.9
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 1.0e-164 583.6 344 86.9
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.4e-145 520.0 352 78.7
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 7.0e-142 507.7 383 71.3
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 2.3e-140 502.7 342 74.9
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 2.3e-124 449.5 321 67.6
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 3.3e-123 445.7 324 66.4
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 4.3e-123 445.3 341 64.2
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 7.3e-123 444.5 324 66.4
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 5.2e-121 438.3 340 62.6
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 6.8e-121 438.0 303 69.6
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 2.0e-120 436.4 313 66.8
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 3.4e-120 435.6 321 66.0
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 5.8e-120 434.9 313 68.1
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 1.3e-119 433.7 324 64.8
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 1.3e-119 433.7 328 63.1
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.7e-119 433.3 322 64.3
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 2.2e-119 433.0 323 65.9
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 2.9e-119 432.6 324 64.5
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.1e-118 430.6 328 62.8
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 1.4e-118 430.3 323 63.5
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 1.9e-118 429.9 339 61.4
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 4.2e-118 428.7 309 67.0
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 5.4e-118 428.3 329 63.2
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 2.1e-117 426.4 344 59.9
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 2.1e-117 426.4 341 60.4
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 2.7e-117 426.0 315 66.7
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 3.5e-117 425.6 314 63.7
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 7.8e-117 424.5 328 63.4
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 1.0e-116 424.1 328 64.6
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 1.0e-116 424.1 313 63.9
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 1.7e-116 423.3 322 62.7
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 1.7e-116 423.3 315 65.4
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 1.7e-116 423.3 306 66.0
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.0e-116 422.5 315 65.1
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 3.0e-116 422.5 337 62.6
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 3.9e-116 422.2 320 62.2
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 3.9e-116 422.2 313 63.6
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 3.9e-116 422.2 341 60.1
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 5.1e-116 421.8 314 63.7
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 5.1e-116 421.8 327 63.0
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 6.6e-116 421.4 315 65.1
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 6.6e-116 421.4 310 64.2
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.5e-115 420.2 327 62.7
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.9e-115 419.9 321 62.6
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 4.3e-115 418.7 330 62.7
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 5.6e-115 418.3 314 64.3
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 9.6e-115 417.5 314 63.7
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 2.1e-114 416.4 328 61.0
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 2.1e-114 416.4 328 61.3
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 2.8e-114 416.0 329 60.8
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 6.2e-114 414.8 357 58.5
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 1.1e-113 414.1 312 62.8
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.4e-113 413.7 341 60.7
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 2.4e-113 412.9 313 62.6
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 5.3e-113 411.8 317 63.1
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 6.9e-113 411.4 321 61.7
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 6.9e-113 411.4 321 61.7
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 6.9e-113 411.4 329 62.0
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 6.9e-113 411.4 329 61.7
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 9.0e-113 411.0 310 64.8
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.0e-112 409.8 317 63.1
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 4.4e-112 408.7 319 63.0
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 3.8e-111 405.6 339 59.3
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 8.4e-111 404.4 314 62.4
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 8.4e-111 404.4 318 62.3
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.4e-110 403.7 299 63.2
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.4e-110 402.9 328 61.0
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 5.4e-110 401.7 317 62.5
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 7.1e-110 401.4 347 57.9
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 7.1e-110 401.4 315 61.6
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 1.2e-109 400.6 328 60.1
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 1.2e-109 400.6 323 60.7
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 2.7e-109 399.4 317 63.1
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 4.6e-109 398.7 323 60.4
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 6.0e-109 398.3 308 61.7
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 1.0e-108 397.5 347 59.4
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 3.9e-108 395.6 312 59.9
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 6.6e-108 394.8 312 60.3
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 6.6e-108 394.8 355 55.5
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.1e-107 394.0 284 67.3
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 2.5e-107 392.9 306 62.1
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.1e-105 387.5 318 59.7
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 2.4e-105 386.3 309 58.6
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 9.0e-105 384.4 286 64.3
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 7.6e-104 381.3 350 54.9
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 7.6e-104 381.3 319 60.2
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 2.2e-103 379.8 325 56.0
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 2.9e-103 379.4 313 58.5
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.4e-102 377.1 311 56.6
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 2.4e-102 376.3 324 57.1
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.1e-101 373.2 279 65.6
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.0e-100 370.9 315 58.1
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 3.9e-100 369.0 316 57.9
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 1.5e-99 367.1 279 63.1
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.9e-99 366.7 316 57.3
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 2.5e-99 366.3 316 57.9
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 3.3e-99 365.9 317 56.8
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 3.3e-99 365.9 315 57.5
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 4.3e-99 365.5 308 58.4
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 5.6e-99 365.2 316 56.6
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 6.2e-98 361.7 337 54.0
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 1.8e-97 360.1 334 53.6
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 4.0e-97 359.0 308 57.5
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 2.6e-96 356.3 314 55.1
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 2.2e-95 353.2 280 62.5
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.3e-92 344.0 312 57.4
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 3.9e-92 342.4 256 64.8
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 3.7e-90 335.9 251 64.9
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 3.7e-90 335.9 263 61.6
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 1.2e-88 330.9 259 59.5
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.0e-88 330.1 278 55.8
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.7e-87 327.0 329 48.3
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 8.5e-87 324.7 303 51.2
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 1.2e-85 320.9 320 52.5
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 7.9e-85 318.2 308 52.9
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 1.8e-84 317.0 333 51.1
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 1.3e-82 310.8 244 61.9
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 2.2e-82 310.1 303 49.2
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 4.8e-82 308.9 310 48.4
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 3.1e-81 306.2 347 48.4
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 4.1e-81 305.8 347 48.4
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 3.4e-80 302.8 311 50.5
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 2.3e-76 290.0 235 57.4
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 2.3e-76 290.0 335 46.6
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 3.9e-76 289.3 323 48.6
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 8.8e-76 288.1 321 46.1
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.0e-71 274.6 277 50.2
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.6e-67 260.0 206 62.6
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 5.3e-65 252.3 202 60.9
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 2.7e-61 240.0 164 69.5
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 1.4e-60 237.7 322 44.7
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 6.1e-53 212.2 183 59.0
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.4e-49 201.1 162 58.0
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.4e-49 201.1 162 58.0
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 3.2e-46 189.9 140 65.0
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 3.5e-40 169.9 359 31.8
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.9e-39 166.8 112 69.6
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 6.1e-37 159.1 116 64.7
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 3.7e-34 149.8 308 35.1
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 2.5e-30 137.1 112 58.9
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 3.3e-30 136.7 303 30.7
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 4.0e-28 129.8 364 29.9
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 5.8e-27 125.9 129 49.6
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 8.3e-26 122.1 164 42.7
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 4.9e-18 96.3 170 36.5
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 9.2e-17 92.0 85 52.9
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 8.6e-15 85.5 105 44.8
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 4.7e-13 79.7 279 24.4


User provided reference genes

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