Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 4.3e-95 351.3 175 100.0
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 1.4e-85 319.7 179 90.5
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 2.4e-85 318.9 175 89.7
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 9.0e-85 317.0 179 88.8
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 5.9e-84 314.3 177 89.3
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 1.0e-83 313.5 171 91.2
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 1.7e-83 312.8 165 92.1
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 5.0e-83 311.2 178 88.2
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 1.1e-82 310.1 177 87.6
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 1.4e-82 309.7 170 89.4
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 3.2e-82 308.5 168 90.5
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 3.6e-81 305.1 168 89.3
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 6.1e-81 304.3 173 87.9
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 7.9e-81 303.9 172 87.2
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 3.9e-80 301.6 167 88.0
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 8.8e-72 273.9 142 93.7
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 8.8e-72 273.9 160 79.4
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 3.3e-71 271.9 154 81.8
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 3.7e-70 268.5 162 79.6
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 4.8e-70 268.1 170 73.5
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 1.8e-69 266.2 168 72.6
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 3.1e-69 265.4 163 75.5
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 9.1e-69 263.8 169 74.0
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 7.7e-68 260.8 154 77.9
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 7.7e-68 260.8 154 76.6
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 2.9e-67 258.8 171 71.9
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 3.8e-67 258.5 169 72.8
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 3.8e-67 258.5 163 72.4
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 6.5e-67 257.7 164 75.0
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 8.5e-67 257.3 158 75.3
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 1.5e-66 256.5 169 71.6
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 1.5e-66 256.5 166 73.5
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 1.5e-66 256.5 170 72.9
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 5.5e-66 254.6 166 69.9
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 7.2e-66 254.2 169 70.4
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.2e-65 253.4 173 70.5
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 1.2e-65 253.4 170 70.6
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 1.6e-65 253.1 153 77.1
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 3.6e-65 251.9 170 71.2
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 4.7e-65 251.5 173 69.9
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 4.7e-65 251.5 168 67.3
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 6.1e-65 251.1 155 74.2
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 8.0e-65 250.8 171 70.2
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 1.0e-64 250.4 157 73.9
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 2.3e-64 249.2 153 78.4
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 2.3e-64 249.2 155 74.2
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 3.0e-64 248.8 157 75.2
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 3.0e-64 248.8 164 72.6
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 3.0e-64 248.8 165 72.7
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 5.2e-64 248.1 152 73.0
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 8.8e-64 247.3 173 68.8
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 1.1e-63 246.9 151 73.5
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.1e-63 246.9 155 72.3
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 1.1e-63 246.9 165 70.3
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 2.6e-63 245.7 170 69.4
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 4.4e-63 245.0 152 73.0
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 7.4e-63 244.2 161 72.0
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 7.4e-63 244.2 161 72.0
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 7.4e-63 244.2 165 72.1
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 2.2e-62 242.7 154 72.1
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 2.2e-62 242.7 152 71.1
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 2.2e-62 242.7 165 69.1
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 2.8e-62 242.3 164 68.3
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 3.7e-62 241.9 203 61.6
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 4.8e-62 241.5 164 67.1
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 4.8e-62 241.5 167 68.9
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 8.2e-62 240.7 161 70.2
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 8.2e-62 240.7 157 72.6
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 1.1e-61 240.4 170 68.8
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 1.1e-61 240.4 163 66.9
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 1.4e-61 240.0 163 68.7
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 4.1e-61 238.4 168 67.3
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 5.3e-61 238.0 161 67.1
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 7.0e-61 237.7 164 68.9
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 9.1e-61 237.3 168 62.5
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 9.1e-61 237.3 166 69.9
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.2e-60 236.9 157 67.5
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 2.0e-60 236.1 152 71.7
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 2.0e-60 236.1 153 71.9
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.0e-60 236.1 161 69.6
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 1.3e-59 233.4 178 66.9
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 5.0e-59 231.5 152 67.1
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 1.9e-58 229.6 151 71.5
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 3.2e-58 228.8 132 86.4
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 5.5e-58 228.0 171 66.1
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 9.4e-58 227.3 171 64.3
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 1.6e-57 226.5 158 68.4
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 3.7e-54 215.3 177 63.3
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 1.3e-51 206.8 161 65.2
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 2.5e-50 202.6 121 74.4
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 5.5e-50 201.4 148 62.2
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 6.8e-48 194.5 121 73.6
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 2.0e-47 193.0 146 60.3
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 5.7e-47 191.4 125 68.8
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 9.8e-47 190.7 102 90.2
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 9.8e-47 190.7 129 67.4
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 2.8e-46 189.1 155 63.2
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 4.1e-45 185.3 165 54.5
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 1.7e-43 179.9 153 56.9
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 3.8e-43 178.7 149 59.7
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 3.2e-37 159.1 156 53.8
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 5.4e-37 158.3 156 53.8
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 2.5e-34 149.4 119 67.2
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-32 144.1 92 68.5
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 9.8e-31 137.5 94 74.5
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 7.8e-28 127.9 77 71.4
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 2.4e-21 106.3 75 69.3
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.3e-11 73.9 50 68.0
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 6.2e-09 65.1 42 66.7
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 8.1e-09 64.7 50 66.0
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 1.4e-08 63.9 51 66.7
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 8.9e-08 61.2 43 67.4
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 4.4e-07 58.9 79 44.3
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 3.8e-06 55.8 49 51.0
TPR.G26213 Trifolium pratense HOM05D006982 ORTHO05D008909 6.4e-06 55.1 47 55.3


User provided reference genes

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