Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR292380 Cardamine hirsuta HOM05D004614 ORTHO05D005339 5.7e-88 327.4 150 100.0
BcaB04g17805 Brassica carinata HOM05D004614 ORTHO05D005339 3.1e-65 251.9 127 92.9
BcaC07g37479 Brassica carinata HOM05D004614 ORTHO05D005339 3.1e-65 251.9 127 92.9
A08p07800 Brassica napus HOM05D004614 ORTHO05D005339 3.1e-65 251.9 127 92.9
C08p09450 Brassica napus HOM05D004614 ORTHO05D005339 3.1e-65 251.9 127 92.9
BolC8t47801H Brassica oleracea HOM05D004614 ORTHO05D005339 3.1e-65 251.9 127 92.9
BraA08t32800Z Brassica rapa HOM05D004614 ORTHO05D005339 3.1e-65 251.9 127 92.9
Sp1g32010 Schrenkiella parvula HOM05D004614 ORTHO05D005339 3.1e-65 251.9 127 92.9
AL1G51310 Arabidopsis lyrata HOM05D004614 ORTHO05D005339 1.5e-64 249.6 125 92.8
Carub.0001s3422 Capsella rubella HOM05D004614 ORTHO05D005339 1.5e-64 249.6 125 92.8
AT1G42430 Arabidopsis thaliana HOM05D004614 ORTHO05D005339 9.9e-64 246.9 125 92.0
Thhalv10004272m.g Eutrema salsugineum HOM05D004614 ORTHO05D005339 9.9e-64 246.9 127 91.3
THA.LOC104813167 Tarenaya hassleriana HOM05D004614 ORTHO05D005339 2.7e-61 238.8 126 88.1
Aa31LG8G13830 Aethionema arabicum HOM05D004614 ORTHO05D005339 1.9e-59 232.6 118 90.7
EL10Ac1g01976 Beta vulgaris HOM05D004614 ORTHO05D005339 1.1e-57 226.9 112 90.2
Aqoxy6G01739 Aquilegia oxysepala HOM05D004614 ORTHO05D005339 1.8e-57 226.1 125 83.2
QL02p013984 Quercus lobata HOM05D004614 ORTHO05D005339 2.4e-57 225.7 123 84.6
Sed0024410 Sechium edule HOM05D004614 ORTHO05D005339 5.2e-57 224.6 125 83.2
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 8.9e-57 223.8 125 82.4
TWI56G0787 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 2.6e-56 222.2 126 83.3
Cfa014064 Carpinus fangiana HOM05D004614 ORTHO05D005339 3.4e-56 221.9 123 83.7
TAR376G0430 Trochodendron aralioides HOM05D004614 ORTHO05D005339 3.4e-56 221.9 125 82.4
Hma1.2p1_0507F.1_g168400 Hydrangea macrophylla HOM05D004614 ORTHO05D005339 4.4e-56 221.5 125 83.2
Migut.C00954 Erythranthe guttata HOM05D004614 ORTHO05D005339 7.6e-56 220.7 130 80.0
Cc10_g00730 Coffea canephora HOM05D004614 ORTHO05D005339 9.9e-56 220.3 126 82.5
MELO3C026543.2 Cucumis melo HOM05D004614 ORTHO05D005339 4.9e-55 218.0 136 76.5
Lj1g0005022 Lotus japonicus HOM05D004614 ORTHO05D005339 4.9e-55 218.0 123 82.1
DCAR_016768 Daucus carota HOM05D004614 ORTHO05D005339 8.4e-55 217.2 127 80.3
HPP92_020707 Vanilla planifolia HOM05D004614 ORTHO05D005339 1.4e-54 216.5 126 77.8
Peaxi162Scf00064g01132 Petunia axillaris HOM05D004614 ORTHO05D005339 1.9e-54 216.1 125 79.2
unitig_82.g27116 Utricularia gibba HOM05D004614 ORTHO05D005339 1.9e-54 216.1 124 79.0
AUR62036884 Chenopodium quinoa HOM05D004614 ORTHO05D005339 5.4e-54 214.5 123 82.9
Potri.002G011300 Populus trichocarpa HOM05D004614 ORTHO05D005339 5.4e-54 214.5 123 80.5
Nn5g30931 Nelumbo nucifera HOM05D004614 ORTHO05D005339 9.2e-54 213.8 123 80.5
Oeu056211.1 Olea europaea HOM05D004614 ORTHO05D005339 3.5e-53 211.8 121 81.8
Duzib093G0152 Durio zibethinus HOM05D004614 ORTHO05D005339 6.0e-53 211.1 125 79.2
Glyma.04G018400 Glycine max HOM05D004614 ORTHO05D005339 7.8e-53 210.7 117 82.9
VMungo1309G2703 Vigna mungo HOM05D004614 ORTHO05D005339 7.8e-53 210.7 122 80.3
Glyma.06G018700 Glycine max HOM05D004614 ORTHO05D005339 2.3e-52 209.1 117 82.1
Ca_15438_v3 Cicer arietinum L. HOM05D004614 ORTHO05D005339 3.9e-52 208.4 124 79.0
TPR.G38127 Trifolium pratense HOM05D004614 ORTHO05D005339 1.5e-51 206.5 119 79.8
Peaxi162Scf00893g00434 Petunia axillaris HOM05D004614 ORTHO05D005339 1.9e-51 206.1 120 81.7
Psat5g011520 Pisum sativum HOM05D004614 ORTHO05D005339 7.3e-51 204.1 119 79.0
Phvul.009G010200 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 9.6e-51 203.8 124 78.2
Solyc12g094570.1 Solanum lycopersicum HOM05D004614 ORTHO05D005339 2.1e-50 202.6 121 76.9
Sopen12g031480 Solanum pennellii HOM05D004614 ORTHO05D005339 2.1e-50 202.6 121 76.9
Lj4A805T24 Lonicera japonica HOM05D004614 ORTHO05D005339 8.1e-50 200.7 105 84.8
RcHm_v2.0_Chr6g0304201 Rosa chinensis HOM05D004614 ORTHO05D005339 1.1e-49 200.3 114 81.6
Sc15g0004500 Simmondsia chinensis HOM05D004614 ORTHO05D005339 2.4e-49 199.1 123 78.9
Lalb_Chr11g0061661 Lupinus albus HOM05D004614 ORTHO05D005339 4.0e-49 198.4 115 80.0
Medtr3g115210 Medicago truncatula HOM05D004614 ORTHO05D005339 6.9e-49 197.6 119 77.3
Gohir.A01G106500 Gossypium hirsutum HOM05D004614 ORTHO05D005339 9.0e-49 197.2 124 74.2
PGR031G0851 Punica granatum HOM05D004614 ORTHO05D005339 2.0e-48 196.1 129 77.5
TAR625G0334 Trochodendron aralioides HOM05D004614 ORTHO05D005339 2.2e-47 192.6 125 74.4
CSS0048285 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 3.2e-46 188.7 125 74.4
Thecc.08G058000 Theobroma cacao HOM05D004614 ORTHO05D005339 3.2e-46 188.7 125 74.4
Ciclev10001231m.g Citrus clementina HOM05D004614 ORTHO05D005339 4.2e-46 188.3 125 74.4
Nn6g31744 Nelumbo nucifera HOM05D004614 ORTHO05D005339 9.3e-46 187.2 123 75.6
Prupe.1G354900 Prunus persica HOM05D004614 ORTHO05D005339 1.6e-45 186.4 126 73.0
Ah.00g000370 Amaranthus hybridus HOM05D004614 ORTHO05D005339 2.1e-45 186.0 111 80.2
CsaV3_6G031620 Cucumis sativus L. HOM05D004614 ORTHO05D005339 3.5e-45 185.3 125 72.8
CANSAT25G1550 Cannabis sativa HOM05D004614 ORTHO05D005339 6.0e-45 184.5 125 73.6
FvH4_2g37530 Fragaria vesca HOM05D004614 ORTHO05D005339 1.0e-44 183.7 109 77.1
FAN15G3067 Fragaria x ananassa HOM05D004614 ORTHO05D005339 1.0e-44 183.7 109 77.1
FAN20G3039 Fragaria x ananassa HOM05D004614 ORTHO05D005339 1.0e-44 183.7 109 77.1
vmacro04401 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.0e-44 182.2 125 72.0
Manes.05G134900 Manihot esculenta HOM05D004614 ORTHO05D005339 8.7e-44 180.6 123 73.2
FAN27G1062 Fragaria x ananassa HOM05D004614 ORTHO05D005339 1.1e-43 180.3 125 70.4
TWI36G0356 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 3.3e-43 178.7 125 71.2
CAN.G311.111 Capsicum annuum HOM05D004614 ORTHO05D005339 1.3e-42 176.8 128 69.5
MD08G1002900 Malus domestica HOM05D004614 ORTHO05D005339 1.3e-42 176.8 125 71.2
MD15G1002600 Malus domestica HOM05D004614 ORTHO05D005339 1.3e-42 176.8 126 70.6
Eucgr.F03550 Eucalyptus grandis HOM05D004614 ORTHO05D005339 1.6e-42 176.4 126 69.8
SGA_v2.0_scaffold275G46591 Striga asiatica HOM05D004614 ORTHO05D005339 1.6e-42 176.4 125 70.4
PGSC0003DMG400029318 Solanum tuberosum HOM05D004614 ORTHO05D005339 2.8e-42 175.6 118 71.2
Actinidia29786 Actinidia chinensis HOM05D004614 ORTHO05D005339 3.6e-42 175.3 125 69.6
CiPaw.08G072400 Carya illinoinensis HOM05D004614 ORTHO05D005339 4.8e-42 174.9 123 70.7
Pp3c7_400 Physcomitrium patens HOM05D004614 ORTHO05D005339 4.8e-42 174.9 114 69.3
PGSC0003DMG400009975 Solanum tuberosum HOM05D004614 ORTHO05D005339 4.8e-42 174.9 125 68.8
Solyc04g082290.4 Solanum lycopersicum HOM05D004614 ORTHO05D005339 1.4e-41 173.3 125 68.0
Sopen04g035910 Solanum pennellii HOM05D004614 ORTHO05D005339 1.4e-41 173.3 125 68.0
ECA232G3530 Erigeron canadensis HOM05D004614 ORTHO05D005339 3.1e-41 172.2 122 70.5
GSVIVG01008677001 Vitis vinifera HOM05D004614 ORTHO05D005339 3.1e-41 172.2 114 73.7
Lsat_1_v5_gn_9_45021 Lactuca sativa HOM05D004614 ORTHO05D005339 1.5e-40 169.9 127 68.5
Mapoly0189s0007 Marchantia polymorpha HOM05D004614 ORTHO05D005339 3.4e-40 168.7 110 68.2
SMO169G0316 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 4.5e-40 168.3 124 65.3
COL.COLO4_04001 Corchorus olitorius HOM05D004614 ORTHO05D005339 5.8e-40 167.9 121 71.1
Dinv25909 Davidia involucrata HOM05D004614 ORTHO05D005339 7.6e-40 167.5 131 64.1
Potri.005G249700 Populus trichocarpa HOM05D004614 ORTHO05D005339 9.9e-40 167.2 119 69.7
CDE02G2145 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 1.3e-39 166.8 105 76.2
Hund01763 Selenicereus undatus HOM05D004614 ORTHO05D005339 2.9e-39 165.6 111 73.0
Duzib116G0199 Durio zibethinus HOM05D004614 ORTHO05D005339 6.4e-39 164.5 119 68.9
ClCG08G009480 Citrullus lanatus HOM05D004614 ORTHO05D005339 3.2e-38 162.2 84 86.9
Cpa.g.sc26.206 Carica papaya HOM05D004614 ORTHO05D005339 5.4e-38 161.4 120 66.7
CiPaw.07G139400 Carya illinoinensis HOM05D004614 ORTHO05D005339 9.3e-38 160.6 98 78.6
Sabra05G0193200 Salix brachista HOM05D004614 ORTHO05D005339 1.6e-37 159.8 125 66.4
Actinidia37970 Actinidia chinensis HOM05D004614 ORTHO05D005339 1.0e-36 157.1 119 67.2
Rhsim07G0254700 Rhododendron simsii HOM05D004614 ORTHO05D005339 1.8e-36 156.4 122 67.2
Gohir.A05G179800 Gossypium hirsutum HOM05D004614 ORTHO05D005339 6.7e-36 154.5 104 73.1
Gorai.009G188200 Gossypium raimondii HOM05D004614 ORTHO05D005339 6.7e-36 154.5 104 73.1
Os03g0133300 Oryza sativa ssp. japonica HOM05D004614 ORTHO05D005339 1.5e-35 153.3 121 65.3
HanXRQChr05g0146811 Helianthus annuus HOM05D004614 ORTHO05D005339 1.9e-35 152.9 114 66.7
Pp3c11_25930 Physcomitrium patens HOM05D004614 ORTHO05D005339 1.9e-35 152.9 105 65.7
Duzib041G0192 Durio zibethinus HOM05D004614 ORTHO05D005339 2.5e-35 152.5 105 70.5
HanXRQChr14g0428261 Helianthus annuus HOM05D004614 ORTHO05D005339 2.5e-35 152.5 120 64.2
unitig_748.g7709 Utricularia gibba HOM05D004614 ORTHO05D005339 2.1e-34 149.4 110 67.3
MD07G1011800 Malus domestica HOM05D004614 ORTHO05D005339 4.8e-34 148.3 80 85.0
Rhsim06G0008000 Rhododendron simsii HOM05D004614 ORTHO05D005339 1.8e-33 146.4 125 59.2
Lsat_1_v5_gn_2_6461 Lactuca sativa HOM05D004614 ORTHO05D005339 6.9e-33 144.4 115 62.6
Gorai.002G118400 Gossypium raimondii HOM05D004614 ORTHO05D005339 1.7e-31 139.8 75 84.0
ATR0661G410 Amborella trichopoda HOM05D004614 ORTHO05D005339 3.8e-31 138.7 80 81.2
Gohir.D01G093000 Gossypium hirsutum HOM05D004614 ORTHO05D005339 3.8e-31 138.7 75 84.0
PSO541G0908 Papaver somniferum HOM05D004614 ORTHO05D005339 8.4e-31 137.5 125 57.6
PSO675G0524 Papaver somniferum HOM05D004614 ORTHO05D005339 8.4e-31 137.5 125 57.6
SEGI_03937 Sequoiadendron giganteum HOM05D004614 ORTHO05D005339 5.5e-30 134.8 76 81.6
Lj4A12T78 Lonicera japonica HOM05D004614 ORTHO05D005339 2.3e-28 129.4 64 90.6
HanXRQChr15g0492731 Helianthus annuus HOM05D004614 ORTHO05D005339 5.1e-28 128.3 79 74.7
MD11G1103700 Malus domestica HOM05D004614 ORTHO05D005339 1.6e-26 123.2 70 82.9
Nitab4.5_0010763g0030 Nicotiana tabacum HOM05D004614 ORTHO05D005339 6.2e-26 121.3 64 85.9
Phvul.L001638 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 1.4e-25 120.2 61 88.5
CBR_g19275 Chara braunii HOM05D006445 ORTHO05D008030 6.5e-23 111.3 92 51.1
Nitab4.5_0000699g0050 Nicotiana tabacum HOM05D004614 ORTHO05D005339 3.5e-21 105.5 64 75.0
Manes.18G005900 Manihot esculenta HOM05D004614 ORTHO05D005339 2.3e-20 102.8 82 63.4
AUR62043351 Chenopodium quinoa HOM05D004614 ORTHO05D005339 3.0e-20 102.4 67 70.1
Dinv31932 Davidia involucrata HOM05D004614 ORTHO05D005339 3.7e-18 95.5 53 81.1
Nitab4.5_0000588g0160 Nicotiana tabacum HOM05D004614 ORTHO05D005339 5.3e-17 91.7 126 43.7
ClCG08G009540 Citrullus lanatus HOM05D004614 ORTHO05D005339 1.5e-16 90.1 65 66.2
Ciclev10004554m.g Citrus clementina HOM05D006445 ORTHO05D008030 4.5e-16 88.6 91 46.2
PGSC0003DMG400033656 Solanum tuberosum HOM05D004614 ORTHO05D005339 5.0e-15 85.1 56 71.4
Cre05.g248000 Chlamydomonas reinhardtii HOM05D004614 ORTHO05D005339 7.2e-14 81.3 103 39.8
TAR381G0464 Trochodendron aralioides HOM05D004614 ORTHO05D005339 2.1e-13 79.7 73 57.5
arahy.Tifrunner.gnm1.ann1.MYP9FH Arachis hypogaea HOM05D004614 ORTHO05D005339 1.4e-12 77.0 103 43.7
arahy.Tifrunner.gnm1.ann1.7DZ9XI Arachis hypogaea HOM05D004614 ORTHO05D005339 2.3e-12 76.3 103 43.7
Cc03_g04450 Coffea canephora HOM05D006445 ORTHO05D008030 2.3e-12 76.3 71 47.9
Peaxi162Scf00447g00052 Petunia axillaris HOM05D004614 ORTHO05D005339 8.8e-12 74.3 100 44.0
TAR549G0008 Trochodendron aralioides HOM05D006445 ORTHO05D008030 2.5e-11 72.8 54 57.4
TAR633G2087 Trochodendron aralioides HOM05D006445 ORTHO05D008030 2.5e-11 72.8 54 57.4
Zm00001eb200610 Zea mays HOM05D006445 ORTHO05D008030 2.5e-11 72.8 97 37.1
Hund05117 Selenicereus undatus HOM05D004614 ORTHO05D005339 4.3e-11 72.0 32 96.9
Atru.chr13.150 Acer truncatum HOM05D004614 ORTHO05D005339 7.4e-11 71.2 43 76.7
Gohir.D05G182900 Gossypium hirsutum HOM05D004614 ORTHO05D005339 6.3e-10 68.2 41 73.2
Os11g0586300 Oryza sativa ssp. japonica HOM05D006445 ORTHO05D008030 1.1e-09 67.4 68 45.6
Nitab4.5_0006949g0050 Nicotiana tabacum HOM05D004614 ORTHO05D005339 2.0e-08 63.2 32 84.4
MCO11G687 Micromonas commoda HOM05D004614 ORTHO05D005339 3.4e-08 62.4 121 33.1
Mapoly0053s0066 Marchantia polymorpha HOM05D006445 ORTHO05D008030 1.3e-07 60.5 68 36.8
CSS0044612 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 8.5e-07 57.8 28 92.9
CiPaw.01G193800 Carya illinoinensis HOM05D006445 ORTHO05D008030 8.5e-07 57.8 37 62.2
TWI09G0629 Tripterygium wilfordii HOM05D006445 ORTHO05D008030 3.2e-06 55.8 96 32.3
Phvul.007G279100 Phaseolus vulgaris HOM05D006445 ORTHO05D008030 7.2e-06 54.7 89 33.7
VMungo0720G0393 Vigna mungo HOM05D006445 ORTHO05D008030 9.4e-06 54.3 89 32.6


User provided reference genes

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