Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR292260 Cardamine hirsuta HOM05D008073 ORTHO05D000309 5.4e-65 250.8 119 100.0
CARHR102990 Cardamine hirsuta HOM05D009173 ORTHO05D000309 1.1e-17 93.6 94 45.7
AL6G38890 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 1.1e-14 83.6 98 41.8
AL5G24470 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 1.1e-12 77.0 137 38.0
AL3G40990 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 1.8e-12 76.3 74 47.3
AL6G49470 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 1.8e-12 76.3 74 47.3
AL1G56990 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 2.4e-12 75.9 117 33.3
AL2G19320 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 5.3e-12 74.7 82 41.5
AL4G18060 Arabidopsis lyrata HOM05D008073 ORTHO05D000309 6.9e-12 74.3 117 33.3
BraA09t38926Z Brassica rapa HOM05D009173 ORTHO05D000309 2.6e-11 72.4 86 37.2
BcaB01g00830 Brassica carinata HOM05D008073 ORTHO05D000309 3.4e-11 72.0 112 33.9
A07p31530 Brassica napus HOM05D008073 ORTHO05D000309 7.7e-11 70.9 97 37.1
BcaC05g25280 Brassica carinata HOM05D008073 ORTHO05D000309 1.7e-10 69.7 100 38.0
BcaC01g02494 Brassica carinata HOM05D009173 ORTHO05D000309 2.9e-10 68.9 111 29.7
Sp5g12640 Schrenkiella parvula HOM05D009173 ORTHO05D000309 3.8e-10 68.6 109 33.0
BcaB04g19293 Brassica carinata HOM05D008073 ORTHO05D000309 5.0e-10 68.2 112 33.9
BcaB05g22492 Brassica carinata HOM05D007774 ORTHO05D000309 6.5e-10 67.8 80 46.2
BcaB05g22493 Brassica carinata HOM05D007774 ORTHO05D000309 6.5e-10 67.8 80 46.2
BcaC07g38082 Brassica carinata HOM05D009173 ORTHO05D000309 1.9e-09 66.2 99 35.4
Nitab4.5_0007686g0050 Nicotiana tabacum HOM05D000011 ORTHO05D000018 1.9e-09 66.2 100 35.0
BcaB06g27901 Brassica carinata HOM05D007774 ORTHO05D000309 2.5e-09 65.9 81 38.3
BcaC01g02366 Brassica carinata HOM05D009173 ORTHO05D000309 2.5e-09 65.9 99 32.3
BolC3t18879H Brassica oleracea HOM05D009173 ORTHO05D000309 2.5e-09 65.9 99 32.3
BcaC08g43001 Brassica carinata HOM05D009173 ORTHO05D000309 3.2e-09 65.5 105 34.3
A02p37000 Brassica napus HOM05D008073 ORTHO05D000309 3.2e-09 65.5 120 33.3
BraA02t08687Z Brassica rapa HOM05D008073 ORTHO05D000309 3.2e-09 65.5 120 33.3
BcaC07g37763 Brassica carinata HOM05D008073 ORTHO05D000309 7.2e-09 64.3 121 33.1
BcaB02g11020 Brassica carinata HOM05D007774 ORTHO05D000309 9.4e-09 63.9 96 40.6
C09p42360 Brassica napus HOM05D008073 ORTHO05D000309 9.4e-09 63.9 99 32.3
BolC9t57115H Brassica oleracea HOM05D008073 ORTHO05D000309 9.4e-09 63.9 99 32.3
A01p38280 Brassica napus HOM05D001038 ORTHO05D000395 1.2e-08 63.5 95 36.8
BcaB03g15391 Brassica carinata HOM05D009173 ORTHO05D000309 1.6e-08 63.2 105 32.4
BolC2t09377H Brassica oleracea HOM05D007774 ORTHO05D000309 1.6e-08 63.2 81 38.3
BolC8t48149H Brassica oleracea HOM05D008073 ORTHO05D000309 1.6e-08 63.2 101 36.6
BcaB03g16006 Brassica carinata HOM05D007774 ORTHO05D000309 2.1e-08 62.8 99 34.3
BcaB06g26683 Brassica carinata HOM05D007774 ORTHO05D000309 2.1e-08 62.8 81 37.0
BcaB03g15638 Brassica carinata HOM05D008073 ORTHO05D000309 2.7e-08 62.4 74 41.9
BcaC08g43835 Brassica carinata HOM05D007774 ORTHO05D000309 2.7e-08 62.4 88 37.5
BcaC04g23317 Brassica carinata HOM05D009173 ORTHO05D000309 3.6e-08 62.0 100 30.0
BolC3t19468H Brassica oleracea HOM05D008073 ORTHO05D000309 3.6e-08 62.0 94 31.9
BolC6t36100H Brassica oleracea HOM05D007774 ORTHO05D000309 3.6e-08 62.0 94 34.0
AL8G21820 Arabidopsis lyrata HOM05D007774 ORTHO05D000309 4.7e-08 61.6 79 38.0
BcaB02g11205 Brassica carinata HOM05D007774 ORTHO05D000309 6.1e-08 61.2 81 35.8
BcaB02g11517 Brassica carinata HOM05D007774 ORTHO05D000309 6.1e-08 61.2 81 35.8
BcaB06g26508 Brassica carinata HOM05D007774 ORTHO05D000309 6.1e-08 61.2 81 35.8
BcaB06g26754 Brassica carinata HOM05D007774 ORTHO05D000309 6.1e-08 61.2 81 35.8
BcaB06g27138 Brassica carinata HOM05D007774 ORTHO05D000309 6.1e-08 61.2 81 35.8
Nitab4.5_0007534g0030 Nicotiana tabacum HOM05D001883 ORTHO05D002184 6.1e-08 61.2 80 36.2
Peaxi162Scf00043g00065 Petunia axillaris HOM05D004040 ORTHO05D000309 6.1e-08 61.2 76 35.5
Peaxi162Scf00274g00613 Petunia axillaris HOM05D004040 ORTHO05D000309 6.1e-08 61.2 76 35.5
Peaxi162Scf00677g00029 Petunia axillaris HOM05D004040 ORTHO05D000309 6.1e-08 61.2 76 35.5
BcaB05g24508 Brassica carinata HOM05D001224 ORTHO05D000309 1.0e-07 60.5 83 36.1
BcaC06g34090 Brassica carinata HOM05D007774 ORTHO05D000309 1.0e-07 60.5 110 29.1
BcaC06g36173 Brassica carinata HOM05D007774 ORTHO05D000309 1.0e-07 60.5 88 36.4
A05p13640 Brassica napus HOM05D008073 ORTHO05D000309 1.0e-07 60.5 80 40.0
AUR62006272 Chenopodium quinoa HOM05D008388 ORTHO05D000309 1.0e-07 60.5 106 28.3
BraA09t41073Z Brassica rapa HOM05D007774 ORTHO05D000309 1.4e-07 60.1 99 33.3
BcaB06g26191 Brassica carinata HOM05D007774 ORTHO05D000309 1.8e-07 59.7 83 31.3
Prupe.7G055500 Prunus persica HOM05D001383 ORTHO05D000309 1.8e-07 59.7 95 35.8
Solyc05g017863.1 Solanum lycopersicum HOM05D004040 ORTHO05D000309 1.8e-07 59.7 89 32.6
Hma1.2p1_1041F.1_g251030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.0e-07 58.9 76 39.5
Nitab4.5_0001931g0130 Nicotiana tabacum HOM05D001883 ORTHO05D002184 3.0e-07 58.9 80 36.2
Solyc12g150117.1 Solanum lycopersicum HOM05D004040 ORTHO05D000309 3.0e-07 58.9 68 39.7
EL10Ac9g22677 Beta vulgaris HOM05D008388 ORTHO05D000309 3.9e-07 58.5 78 37.2
BcaC03g14058 Brassica carinata HOM05D008073 ORTHO05D000309 3.9e-07 58.5 79 39.2
BcaC03g17928 Brassica carinata HOM05D008073 ORTHO05D000309 3.9e-07 58.5 116 31.9
Nitab4.5_0022073g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 3.9e-07 58.5 76 38.2
Peaxi162Scf00562g00008 Petunia axillaris HOM05D004040 ORTHO05D000309 3.9e-07 58.5 51 47.1
Peaxi162Scf01167g00009 Petunia axillaris HOM05D004040 ORTHO05D000309 3.9e-07 58.5 51 47.1
EL10Ac5g11999 Beta vulgaris HOM05D008388 ORTHO05D000309 5.1e-07 58.2 78 37.2
BolC6t36277H Brassica oleracea HOM05D009173 ORTHO05D027589 5.1e-07 58.2 88 38.6
COL.COLO4_35283 Corchorus olitorius HOM05D023691 ORTHO05D000309 5.1e-07 58.2 96 38.5
Nitab4.5_0002367g0200 Nicotiana tabacum HOM05D001883 ORTHO05D002184 5.1e-07 58.2 78 37.2
Nitab4.5_0004598g0010 Nicotiana tabacum HOM05D001883 ORTHO05D002184 5.1e-07 58.2 80 35.0
Peaxi162Scf00914g00516 Petunia axillaris HOM05D004040 ORTHO05D000309 5.1e-07 58.2 51 47.1
Sopen00g004430 Solanum pennellii HOM05D000679 ORTHO05D000482 5.1e-07 58.2 68 38.2
BcaC01g02160 Brassica carinata HOM05D008073 ORTHO05D000309 6.7e-07 57.8 99 36.4
C03p68050 Brassica napus HOM05D008073 ORTHO05D000309 6.7e-07 57.8 99 36.4
Lsat_1_v5_gn_4_135900 Lactuca sativa HOM05D009585 ORTHO05D000309 6.7e-07 57.8 80 36.2
Medtr8g070590 Medicago truncatula HOM05D001383 ORTHO05D000309 6.7e-07 57.8 93 35.5
Nitab4.5_0009037g0060 Nicotiana tabacum HOM05D004040 ORTHO05D000309 6.7e-07 57.8 77 36.4
BcaB03g16062 Brassica carinata HOM05D008073 ORTHO05D000309 8.8e-07 57.4 114 35.1
BcaC06g36745 Brassica carinata HOM05D008073 ORTHO05D031794 8.8e-07 57.4 95 32.6
EL10Ac8g18852 Beta vulgaris HOM05D008388 ORTHO05D000309 1.1e-06 57.0 92 34.8
BcaC08g43767 Brassica carinata HOM05D009173 ORTHO05D000309 1.1e-06 57.0 104 32.7
BcaNung00231 Brassica carinata HOM05D008073 ORTHO05D000309 1.1e-06 57.0 94 31.9
DCAR_029331 Daucus carota HOM05D001383 ORTHO05D000309 1.1e-06 57.0 90 35.6
Peaxi162Scf01138g00111 Petunia axillaris HOM05D004040 ORTHO05D000309 1.1e-06 57.0 56 39.3
SGA_v2.0_scaffold157G37387 Striga asiatica HOM05D001383 ORTHO05D000309 1.1e-06 57.0 86 38.4
BcaB06g28129 Brassica carinata HOM05D008073 ORTHO05D000309 1.5e-06 56.6 114 35.1
BcaC05g26851 Brassica carinata HOM05D007774 ORTHO05D000309 1.5e-06 56.6 77 39.0
C06p11380 Brassica napus HOM05D009173 ORTHO05D027589 1.5e-06 56.6 84 35.7
CAN.G1288.6 Capsicum annuum HOM05D004040 ORTHO05D000309 1.5e-06 56.6 92 33.7
Medtr5g021030 Medicago truncatula HOM05D001383 ORTHO05D000309 1.5e-06 56.6 98 34.7
Nitab4.5_0001226g0050 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.5e-06 56.6 80 33.8
BcaB02g10845 Brassica carinata HOM05D008073 ORTHO05D000309 2.0e-06 56.2 115 31.3
Medtr2g008290 Medicago truncatula HOM05D001383 ORTHO05D000309 2.0e-06 56.2 98 34.7
Nitab4.5_0010359g0020 Nicotiana tabacum HOM05D004040 ORTHO05D000309 2.0e-06 56.2 96 33.3
BcaB02g11463 Brassica carinata HOM05D001224 ORTHO05D000309 2.6e-06 55.8 85 37.6
BcaB06g26646 Brassica carinata HOM05D007774 ORTHO05D000309 2.6e-06 55.8 81 34.6
SGA_v2.0_scaffold14G06948 Striga asiatica HOM05D001383 ORTHO05D000309 2.6e-06 55.8 96 34.4
EL10Ac9g22366 Beta vulgaris HOM05D008388 ORTHO05D000309 3.3e-06 55.5 94 31.9
EL10Ac5g10607 Beta vulgaris HOM05D008388 ORTHO05D000309 4.4e-06 55.1 81 30.9
BcaC01g02929 Brassica carinata HOM05D007774 ORTHO05D000309 4.4e-06 55.1 86 34.9
BolC7t41880H Brassica oleracea HOM05D008073 ORTHO05D000309 4.4e-06 55.1 62 38.7
COL.COLO4_15560 Corchorus olitorius HOM05D015200 ORTHO05D000309 4.4e-06 55.1 80 36.2
DCAR_029798 Daucus carota HOM05D001383 ORTHO05D000309 4.4e-06 55.1 98 30.6
Peaxi162Scf00446g00005 Petunia axillaris HOM05D001383 ORTHO05D000309 4.4e-06 55.1 57 38.6
EL10Ac6g14557 Beta vulgaris HOM05D007123 ORTHO05D000309 5.7e-06 54.7 99 34.3
BcaC02g10455 Brassica carinata HOM05D007774 ORTHO05D000309 5.7e-06 54.7 81 34.6
COL.COLO4_06499 Corchorus olitorius HOM05D015200 ORTHO05D000309 5.7e-06 54.7 81 39.5
Nitab4.5_0000463g0060 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.7e-06 54.7 55 41.8
Nitab4.5_0006039g0030 Nicotiana tabacum HOM05D004040 ORTHO05D000309 5.7e-06 54.7 74 37.8
SGA_v2.0_scaffold238G43895 Striga asiatica HOM05D001383 ORTHO05D000309 5.7e-06 54.7 71 42.3
SGA_v2.0_scaffold23G10087 Striga asiatica HOM05D001383 ORTHO05D000309 5.7e-06 54.7 54 42.6
AT5G33393 Arabidopsis thaliana HOM05D008073 ORTHO05D081038 7.4e-06 54.3 67 34.3
EL10Ac5g12256 Beta vulgaris HOM05D008388 ORTHO05D000309 7.4e-06 54.3 78 38.5
BcaB02g11157 Brassica carinata HOM05D008073 ORTHO05D000309 7.4e-06 54.3 117 32.5


User provided reference genes

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