Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 3.7e-59 231.9 169 100.0
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.3e-40 170.2 175 77.1
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.9e-39 166.4 171 73.7
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.6e-38 163.3 174 68.4
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 4.7e-38 161.8 135 79.3
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 1.0e-37 160.6 135 79.3
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 4.0e-37 158.7 170 67.1
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 4.0e-37 158.7 170 67.1
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 5.2e-37 158.3 138 76.8
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.2e-36 157.1 139 79.9
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 2.0e-36 156.4 137 80.3
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 2.0e-36 156.4 137 80.3
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 2.0e-36 156.4 174 77.0
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 5.7e-36 154.8 174 64.9
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 1.7e-35 153.3 170 60.0
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 1.7e-35 153.3 170 60.0
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 1.7e-35 153.3 170 60.0
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 3.1e-34 149.1 169 63.3
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 5.9e-33 144.8 170 64.7
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 4.0e-29 132.1 142 59.2
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.6e-28 129.4 131 64.1
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 6.0e-25 118.2 123 58.5
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.3e-24 117.1 123 55.3
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 3.0e-24 115.9 123 56.1
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 3.0e-24 115.9 122 54.1
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.1e-23 114.0 123 54.5
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.9e-23 113.2 123 54.5
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 5.6e-23 111.7 136 47.8
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 5.6e-23 111.7 136 47.8
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 5.6e-23 111.7 122 54.1
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 2.1e-22 109.8 127 52.8
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 6.2e-22 108.2 126 51.6
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 8.0e-22 107.8 126 51.6
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 1.4e-21 107.1 121 52.9
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 1.8e-21 106.7 125 49.6
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.3e-21 106.3 127 49.6
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 3.1e-21 105.9 122 49.2
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 4.0e-21 105.5 127 50.4
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 4.0e-21 105.5 122 51.6
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 4.0e-21 105.5 122 49.2
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 8.9e-21 104.4 127 49.6
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.5e-20 103.6 126 49.2
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.5e-20 103.6 84 67.9
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.4e-20 102.1 121 49.6
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 4.4e-20 102.1 127 51.2
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 5.8e-20 101.7 83 62.7
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 5.8e-20 101.7 125 51.2
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 5.8e-20 101.7 120 52.5
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 5.8e-20 101.7 171 40.9
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 5.8e-20 101.7 123 48.8
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 5.8e-20 101.7 136 49.3
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 7.5e-20 101.3 123 48.8
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 7.5e-20 101.3 88 62.5
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 1.3e-19 100.5 121 50.4
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 1.3e-19 100.5 133 50.4
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 1.7e-19 100.1 122 50.0
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.7e-19 100.1 122 52.5
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 1.7e-19 100.1 120 49.2
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.2e-19 99.8 122 49.2
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.2e-19 99.8 172 42.4
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 2.9e-19 99.4 83 62.7
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 3.7e-19 99.0 122 50.8
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 3.7e-19 99.0 122 50.8
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 3.7e-19 99.0 98 59.2
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 3.7e-19 99.0 79 67.1
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 4.9e-19 98.6 123 49.6
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 4.9e-19 98.6 95 56.8
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 4.9e-19 98.6 124 50.0
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 4.9e-19 98.6 88 61.4
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 4.9e-19 98.6 120 50.0
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 4.9e-19 98.6 136 46.3
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 6.4e-19 98.2 137 46.7
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 6.4e-19 98.2 98 61.2
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 6.4e-19 98.2 98 58.2
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 6.4e-19 98.2 137 46.0
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 6.4e-19 98.2 79 67.1
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 8.3e-19 97.8 141 45.4
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 1.1e-18 97.4 85 60.0
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.4e-18 97.1 82 64.6
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 1.9e-18 96.7 81 65.4
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.9e-18 96.7 124 47.6
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 2.4e-18 96.3 98 57.1
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.4e-18 96.3 86 62.8
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.2e-18 95.9 83 62.7
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 4.1e-18 95.5 123 47.2
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 4.1e-18 95.5 123 47.2
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 4.1e-18 95.5 76 67.1
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 4.1e-18 95.5 126 46.0
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 5.4e-18 95.1 123 47.2
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 7.0e-18 94.7 83 62.7
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 9.2e-18 94.4 83 60.2
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 9.2e-18 94.4 76 65.8
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 9.2e-18 94.4 124 46.8
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 1.6e-17 93.6 95 57.9
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 2.1e-17 93.2 122 47.5
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 2.1e-17 93.2 92 59.8
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 2.1e-17 93.2 143 42.7
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.7e-17 92.8 86 61.6
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 2.7e-17 92.8 76 65.8
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 3.5e-17 92.4 124 50.0
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 4.6e-17 92.0 121 46.3
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 6.0e-17 91.7 127 47.2
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 6.0e-17 91.7 127 49.6
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 7.8e-17 91.3 83 57.8
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 7.8e-17 91.3 123 45.5
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 1.0e-16 90.9 126 46.0
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.3e-16 90.5 83 60.2
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.7e-16 90.1 80 62.5
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 2.3e-16 89.7 97 53.6
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 2.3e-16 89.7 121 45.5
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 2.3e-16 89.7 123 48.0
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 2.3e-16 89.7 81 61.7
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 2.3e-16 89.7 126 45.2
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 5.1e-16 88.6 111 49.5
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 6.6e-16 88.2 82 58.5
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 8.6e-16 87.8 143 43.4
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 1.1e-15 87.4 124 46.0
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.5e-15 87.0 97 54.6
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 1.9e-15 86.7 83 54.2
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 3.3e-15 85.9 70 65.7
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 4.3e-15 85.5 132 43.9
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 5.6e-15 85.1 84 56.0
BcaC08g46579 Brassica carinata HOM05D004771 ORTHO05D005565 1.2e-14 84.0 85 82.4
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 1.6e-14 83.6 79 62.0
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 8.1e-14 81.3 83 53.0
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.8e-13 80.1 126 42.9
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 2.3e-13 79.7 68 63.2
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 4.0e-13 79.0 80 52.5
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 4.0e-13 79.0 76 55.3
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 4.0e-13 79.0 76 55.3
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 6.8e-13 78.2 126 42.9
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 8.9e-13 77.8 76 53.9
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 2.6e-12 76.3 137 43.1
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 7.5e-12 74.7 69 60.9
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.3e-11 73.9 59 67.8
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.7e-11 73.6 145 37.2
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.9e-11 72.8 80 55.0
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 8.3e-11 71.2 86 52.3
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 1.4e-10 70.5 70 52.9
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 3.2e-10 69.3 87 50.6
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 2.1e-09 66.6 58 62.1
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.3e-08 63.9 93 44.1
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 1.7e-08 63.5 80 46.2
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 6.6e-08 61.6 46 67.4
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 8.6e-08 61.2 56 55.4
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 4.3e-07 58.9 49 63.3
Cre03.g168500 Chlamydomonas reinhardtii HOM05D004771 ORTHO05D005565 7.3e-07 58.2 84 42.9
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 7.3e-07 58.2 44 63.6
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 9.5e-07 57.8 43 67.4
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 1.6e-06 57.0 80 46.2
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 2.8e-06 56.2 81 44.4
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 8.1e-06 54.7 41 63.4


User provided reference genes

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