Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR290130 Cardamine hirsuta HOM05D001550 ORTHO05D001611 2.6e-30 134.8 72 100.0
AL7G39670 Arabidopsis lyrata HOM05D001550 ORTHO05D001611 1.9e-25 118.6 70 82.9
AT4G15730 Arabidopsis thaliana HOM05D001550 ORTHO05D001611 3.7e-24 114.4 69 84.1
Carub.0007s2599 Capsella rubella HOM05D001550 ORTHO05D001611 1.8e-23 112.1 70 81.4
Sp7g13990 Schrenkiella parvula HOM05D001550 ORTHO05D001611 3.2e-20 101.3 71 74.6
BcaC09g50263 Brassica carinata HOM05D001550 ORTHO05D001611 1.3e-18 95.9 70 74.3
C01p27210 Brassica napus HOM05D001550 ORTHO05D001611 1.3e-18 95.9 70 74.3
A01p21880 Brassica napus HOM05D001550 ORTHO05D001611 5.1e-18 94.0 70 72.9
BraA01t02094Z Brassica rapa HOM05D001550 ORTHO05D001611 5.1e-18 94.0 70 72.9
BolC1t02669H Brassica oleracea HOM05D001550 ORTHO05D001611 1.5e-17 92.4 70 72.9
BcaNung00252 Brassica carinata HOM05D001550 ORTHO05D001611 5.3e-15 84.0 70 67.1
Aa31LG10G6410 Aethionema arabicum HOM05D001550 ORTHO05D001611 4.5e-14 80.9 72 62.5
THA.LOC104808944 Tarenaya hassleriana HOM05D001550 ORTHO05D001611 1.3e-13 79.3 68 55.9
Prupe.1G139000 Prunus persica HOM05D001550 ORTHO05D001611 3.2e-12 74.7 72 51.4
QL06p008333 Quercus lobata HOM05D001550 ORTHO05D001611 3.2e-12 74.7 70 51.4
FAN17G2495 Fragaria x ananassa HOM05D001550 ORTHO05D001611 2.1e-11 72.0 72 48.6
FAN22G2038 Fragaria x ananassa HOM05D001550 ORTHO05D001611 3.6e-11 71.2 72 48.6
Thecc.04G282200 Theobroma cacao HOM05D001550 ORTHO05D001611 4.6e-11 70.9 66 54.5
TWI09G0200 Tripterygium wilfordii HOM05D001550 ORTHO05D001611 6.1e-11 70.5 68 51.5
Gohir.D10G169200 Gossypium hirsutum HOM05D001550 ORTHO05D001611 1.0e-10 69.7 72 48.6
Duzib212G0661 Durio zibethinus HOM05D001550 ORTHO05D001611 1.8e-10 68.9 72 48.6
MD16G1172200 Malus domestica HOM05D001550 ORTHO05D001611 1.8e-10 68.9 70 50.0
FAN07G1583 Fragaria x ananassa HOM05D001550 ORTHO05D001611 2.3e-10 68.6 72 47.2
Gohir.A10G162800 Gossypium hirsutum HOM05D001550 ORTHO05D001611 2.3e-10 68.6 72 47.2
QL03p007439 Quercus lobata HOM05D001550 ORTHO05D001611 2.3e-10 68.6 64 53.1
QL03p007656 Quercus lobata HOM05D001550 ORTHO05D001611 2.3e-10 68.6 64 53.1
RcHm_v2.0_Chr4g0421671 Rosa chinensis HOM05D001550 ORTHO05D001611 2.3e-10 68.6 72 47.2
Gorai.011G188700 Gossypium raimondii HOM05D001550 ORTHO05D001611 3.0e-10 68.2 72 47.2
PSO210G3508 Papaver somniferum HOM05D001550 ORTHO05D001611 3.0e-10 68.2 62 53.2
TAR633G2509 Trochodendron aralioides HOM05D001550 ORTHO05D001611 3.0e-10 68.2 60 51.7
Lalb_Chr15g0083591 Lupinus albus HOM05D001550 ORTHO05D001611 6.7e-10 67.0 72 44.4
Lalb_Chr18g0051781 Lupinus albus HOM05D001550 ORTHO05D001611 6.7e-10 67.0 72 43.1
Haze_04174 Corylus avellana HOM05D001550 ORTHO05D001611 8.8e-10 66.6 63 54.0
PSO170G0358 Papaver somniferum HOM05D001550 ORTHO05D001611 1.1e-09 66.2 62 51.6
TPR.G21916 Trifolium pratense HOM05D001550 ORTHO05D001611 1.1e-09 66.2 72 43.1
TWI14G0264 Tripterygium wilfordii HOM05D001550 ORTHO05D001611 1.1e-09 66.2 64 51.6
Ca_02419_v3 Cicer arietinum L. HOM05D001550 ORTHO05D001611 1.5e-09 65.9 68 44.1
Cc03_g02050 Coffea canephora HOM05D001550 ORTHO05D001611 2.0e-09 65.5 60 53.3
Dinv30777 Davidia involucrata HOM05D001550 ORTHO05D001611 2.5e-09 65.1 63 54.0
ClCG06G005270 Citrullus lanatus HOM05D001550 ORTHO05D001611 3.3e-09 64.7 62 54.8
Dinv44398 Davidia involucrata HOM05D001550 ORTHO05D001611 3.3e-09 64.7 70 50.0
Medtr2g437350 Medicago truncatula HOM05D001550 ORTHO05D001611 4.3e-09 64.3 72 43.1
TAR362G0978 Trochodendron aralioides HOM05D001550 ORTHO05D001611 4.3e-09 64.3 60 50.0
Atru.chr5.1234 Acer truncatum HOM05D001550 ORTHO05D001611 5.7e-09 63.9 62 50.0
MD13G1170600 Malus domestica HOM05D001550 ORTHO05D001611 5.7e-09 63.9 72 45.8
Phvul.003G103100 Phaseolus vulgaris HOM05D001550 ORTHO05D001611 5.7e-09 63.9 72 40.3
VMungo1309G1422 Vigna mungo HOM05D001550 ORTHO05D001611 5.7e-09 63.9 70 42.9
Nn3g21383 Nelumbo nucifera HOM05D001550 ORTHO05D001611 7.4e-09 63.5 57 52.6
CSS0012470 Camellia sinensis var. sinensis HOM05D001550 ORTHO05D001611 9.7e-09 63.2 70 48.6
Ciclev10018467m.g Citrus clementina HOM05D001550 ORTHO05D001611 9.7e-09 63.2 62 50.0
Lalb_Chr15g0078681 Lupinus albus HOM05D001550 ORTHO05D001611 9.7e-09 63.2 62 50.0
Lalb_Chr21g0306771 Lupinus albus HOM05D001550 ORTHO05D001611 9.7e-09 63.2 60 51.7
VMungo1215G2563 Vigna mungo HOM05D001550 ORTHO05D001611 9.7e-09 63.2 72 40.3
CiPaw.02G084400 Carya illinoinensis HOM05D001550 ORTHO05D001611 1.3e-08 62.8 67 44.8
CiPaw.08G098900 Carya illinoinensis HOM05D001550 ORTHO05D001611 1.3e-08 62.8 62 48.4
Lj4g0024545 Lotus japonicus HOM05D001550 ORTHO05D001611 1.3e-08 62.8 72 40.3
Manes.03G193000 Manihot esculenta HOM05D001550 ORTHO05D001611 1.3e-08 62.8 72 41.7
vmacro08125 Vaccinium macrocarpon HOM05D001550 ORTHO05D001611 1.3e-08 62.8 70 47.1
MELO3C021346.2 Cucumis melo HOM05D001550 ORTHO05D001611 1.7e-08 62.4 62 51.6
Lalb_Chr20g0114471 Lupinus albus HOM05D001550 ORTHO05D001611 1.7e-08 62.4 67 43.3
GSVIVG01010964001 Vitis vinifera HOM05D001550 ORTHO05D001611 1.7e-08 62.4 60 50.0
Nitab4.5_0000784g0050 Nicotiana tabacum HOM05D001550 ORTHO05D001611 2.2e-08 62.0 70 44.3
Nitab4.5_0004537g0020 Nicotiana tabacum HOM05D001550 ORTHO05D001611 2.2e-08 62.0 70 44.3
Phvul.009G246100 Phaseolus vulgaris HOM05D001550 ORTHO05D001611 2.2e-08 62.0 70 41.4
Potri.005G028700 Populus trichocarpa HOM05D001550 ORTHO05D001611 2.2e-08 62.0 61 54.1
Atru.chr4.2803 Acer truncatum HOM05D001550 ORTHO05D001611 3.7e-08 61.2 62 46.8
Glyma.15G154200 Glycine max HOM05D001550 ORTHO05D001611 3.7e-08 61.2 72 41.7
CsaV3_6G017320 Cucumis sativus L. HOM05D001550 ORTHO05D001611 4.8e-08 60.8 62 50.0
Duzib151G0932 Durio zibethinus HOM05D001550 ORTHO05D001611 4.8e-08 60.8 72 45.8
Sed0018217 Sechium edule HOM05D001550 ORTHO05D001611 4.8e-08 60.8 62 51.6
CAN.G223.17 Capsicum annuum HOM05D001550 ORTHO05D001611 6.3e-08 60.5 70 47.1
Glyma.17G024800 Glycine max HOM05D001550 ORTHO05D001611 6.3e-08 60.5 72 38.9
RcHm_v2.0_Chr6g0293091 Rosa chinensis HOM05D001550 ORTHO05D001611 6.3e-08 60.5 64 45.3
SalBow2G2718 Salvia bowleyana HOM05D001550 ORTHO05D001611 6.3e-08 60.5 70 42.9
Duzib052G0087 Durio zibethinus HOM05D001550 ORTHO05D001611 8.2e-08 60.1 67 46.3
Prupe.8G255400 Prunus persica HOM05D001550 ORTHO05D001611 8.2e-08 60.1 62 46.8
TAR636G3189 Trochodendron aralioides HOM05D001550 ORTHO05D001611 8.2e-08 60.1 60 46.7
arahy.Tifrunner.gnm1.ann1.1RFZ00 Arachis hypogaea HOM05D001550 ORTHO05D001611 1.1e-07 59.7 62 46.8
Cfa005989 Carpinus fangiana HOM05D001550 ORTHO05D001611 1.1e-07 59.7 62 48.4
Haze_04856 Corylus avellana HOM05D001550 ORTHO05D001611 1.1e-07 59.7 62 48.4
Lalb_Chr02g0143151 Lupinus albus HOM05D001550 ORTHO05D001611 1.1e-07 59.7 62 46.8
Potri.013G020200 Populus trichocarpa HOM05D001550 ORTHO05D001611 1.1e-07 59.7 61 52.5
Ciclev10004133m.g Citrus clementina HOM05D001550 ORTHO05D001611 1.4e-07 59.3 67 44.8
GSVIVG01000093001 Vitis vinifera HOM05D001550 ORTHO05D001611 1.4e-07 59.3 62 46.8
Psat1g152560 Pisum sativum HOM05D001550 ORTHO05D001611 1.8e-07 58.9 57 49.1
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 1.8e-07 58.9 57 49.1
MSTRG.3931 Avicennia marina HOM05D001550 ORTHO05D001611 2.4e-07 58.5 60 50.0
Peaxi162Scf00386g00034 Petunia axillaris HOM05D001550 ORTHO05D001611 2.4e-07 58.5 70 42.9
arahy.Tifrunner.gnm1.ann1.338AY0 Arachis hypogaea HOM05D001550 ORTHO05D001611 3.1e-07 58.2 62 45.2
Actinidia01463 Actinidia chinensis HOM05D001550 ORTHO05D001611 4.1e-07 57.8 60 46.7
CSS0040610 Camellia sinensis var. sinensis HOM05D001550 ORTHO05D001611 4.1e-07 57.8 63 47.6
Glyma.19G208400 Glycine max HOM05D001550 ORTHO05D001611 4.1e-07 57.8 62 46.8
Lj1g0021429 Lotus japonicus HOM05D001550 ORTHO05D001611 4.1e-07 57.8 62 46.8
MBI19_g23996_MAGBIO Magnolia biondii HOM05D001550 ORTHO05D001611 4.1e-07 57.8 60 48.3
CSS0022780 Camellia sinensis var. sinensis HOM05D001550 ORTHO05D001611 5.3e-07 57.4 62 41.9
Lj1A35G65 Lonicera japonica HOM05D001550 ORTHO05D001611 5.3e-07 57.4 62 50.0
Medtr7g108330 Medicago truncatula HOM05D001550 ORTHO05D001611 5.3e-07 57.4 62 46.8
Gorai.005G059300 Gossypium raimondii HOM05D001550 ORTHO05D001611 6.9e-07 57.0 72 41.7
Ca_09127_v3 Cicer arietinum L. HOM05D001550 ORTHO05D001611 9.1e-07 56.6 62 45.2
Oeu021108.1 Olea europaea HOM05D001550 ORTHO05D001611 9.1e-07 56.6 60 46.7
Phvul.001G204500 Phaseolus vulgaris HOM05D001550 ORTHO05D001611 9.1e-07 56.6 62 46.8
MSTRG.21610 Avicennia marina HOM05D001550 ORTHO05D001611 1.2e-06 56.2 61 44.3
Glyma.03G211200 Glycine max HOM05D001550 ORTHO05D001611 1.2e-06 56.2 62 48.4
MD03G1282000 Malus domestica HOM05D001550 ORTHO05D001611 1.2e-06 56.2 62 45.2
Oeu008493.2 Olea europaea HOM05D001550 ORTHO05D001611 1.2e-06 56.2 62 45.2
Psat3g023680 Pisum sativum HOM05D001550 ORTHO05D001611 1.2e-06 56.2 58 50.0
Ah.06g189490 Amaranthus hybridus HOM05D001550 ORTHO05D001611 1.5e-06 55.8 61 49.2
Cpa.g.sc9.187 Carica papaya HOM05D001550 ORTHO05D001611 1.5e-06 55.8 62 45.2
TPR.G9286 Trifolium pratense HOM05D001550 ORTHO05D001611 1.5e-06 55.8 62 43.5
ECA247G0377 Erigeron canadensis HOM05D001550 ORTHO05D001611 2.0e-06 55.5 63 47.6
Lj2A1188G52 Lonicera japonica HOM05D001550 ORTHO05D001611 2.0e-06 55.5 62 43.5
VMungo1383G2550 Vigna mungo HOM05D001550 ORTHO05D001611 2.0e-06 55.5 62 45.2
AUR62005162 Chenopodium quinoa HOM05D001550 ORTHO05D001611 2.6e-06 55.1 63 49.2
COL.COLO4_08001 Corchorus olitorius HOM05D001550 ORTHO05D001611 2.6e-06 55.1 57 49.1
MD11G1301800 Malus domestica HOM05D001550 ORTHO05D001611 2.6e-06 55.1 62 45.2
Nn4g25933 Nelumbo nucifera HOM05D001550 ORTHO05D001611 2.6e-06 55.1 57 45.6
Potri.014G132900 Populus trichocarpa HOM05D001550 ORTHO05D001611 3.4e-06 54.7 62 45.2
Rhsim13G0015300 Rhododendron simsii HOM05D001550 ORTHO05D001611 3.4e-06 54.7 61 44.3
Cc01_g20490 Coffea canephora HOM05D001550 ORTHO05D001611 4.5e-06 54.3 62 41.9
Dinv38303 Davidia involucrata HOM05D001550 ORTHO05D001611 4.5e-06 54.3 53 54.7
Gohir.D11G121600 Gossypium hirsutum HOM05D001550 ORTHO05D001611 4.5e-06 54.3 62 40.3
Thecc.01G293700 Theobroma cacao HOM05D001550 ORTHO05D001611 4.5e-06 54.3 62 43.5
vmacro02489 Vaccinium macrocarpon HOM05D001550 ORTHO05D001611 4.5e-06 54.3 61 42.6
AUR62000806 Chenopodium quinoa HOM05D001550 ORTHO05D001611 5.9e-06 53.9 61 44.3
Gohir.A08G073750 Gossypium hirsutum HOM05D001550 ORTHO05D001611 5.9e-06 53.9 62 45.2
Gohir.D08G083100 Gossypium hirsutum HOM05D001550 ORTHO05D001611 5.9e-06 53.9 62 45.2
Gorai.004G086900 Gossypium raimondii HOM05D001550 ORTHO05D001611 5.9e-06 53.9 62 45.2
Potri.002G209409 Populus trichocarpa HOM05D001550 ORTHO05D001611 5.9e-06 53.9 62 45.2
HanXRQChr03g0079951 Helianthus annuus HOM05D001550 ORTHO05D001611 7.7e-06 53.5 70 37.1
Sc09g0003100 Simmondsia chinensis HOM05D001550 ORTHO05D001611 7.7e-06 53.5 60 43.3


User provided reference genes

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