Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR288580 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.6e-137 492.7 239 100.0
CARHR033610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.0e-86 321.6 205 77.6
CARHR100280 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.0e-83 313.9 211 73.9
AL3G39550 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.4e-67 260.4 211 65.4
AL3G39570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.4e-64 249.6 214 62.6
Carub.0003s2456 Capsella rubella HOM05D002743 ORTHO05D002895 4.1e-64 248.8 210 62.9
AT3G23950 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.0e-62 242.7 256 54.7
Sp3g21990 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.1e-61 240.7 229 57.6
CARHR100270 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.6e-61 238.4 166 71.7
AL3G39540 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.8e-59 233.4 214 59.3
Carub.0003s2455 Capsella rubella HOM05D002743 ORTHO05D002895 1.8e-59 233.4 214 55.6
AT3G23970 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 5.2e-59 231.9 214 59.3
BcaC06g35666 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-57 226.9 226 57.1
C07p12300 Brassica napus HOM05D002743 ORTHO05D002895 1.7e-57 226.9 226 57.1
BolC7t41698H Brassica oleracea HOM05D002743 ORTHO05D002895 1.4e-56 223.8 220 56.8
A07p08150 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-55 220.3 226 55.3
BraA07t28599Z Brassica rapa HOM05D002743 ORTHO05D002895 3.5e-55 219.2 226 55.3
Aa31sc58G40 Aethionema arabicum HOM05D002743 ORTHO05D002895 4.0e-43 179.1 218 47.7
Aa31LG9G5850 Aethionema arabicum HOM05D002743 ORTHO05D002895 5.8e-42 175.3 216 44.9
BcaB06g26601 Brassica carinata HOM05D002743 ORTHO05D002895 9.9e-42 174.5 194 53.1
AL6G47130 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.3e-38 163.3 212 46.7
AL6G43490 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.3e-37 159.5 208 45.2
CARHR288600 Cardamine hirsuta HOM05D002743 ORTHO05D002895 6.2e-36 155.2 95 77.9
AL6G48160 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.9e-35 151.8 212 42.9
Thhalv10029227m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.4e-32 143.3 178 47.2
Aa31sc58G10 Aethionema arabicum HOM05D002743 ORTHO05D002895 3.2e-32 142.9 220 39.1
AL6G48200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.0e-30 136.3 199 43.7
Carub.0006s2838 Capsella rubella HOM05D002743 ORTHO05D002895 5.6e-29 132.1 259 35.9
CARHR288590 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.6e-29 132.1 98 66.3
Carub.0006s3248 Capsella rubella HOM05D002743 ORTHO05D002895 1.6e-28 130.6 207 39.1
CARHR100310 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.9e-25 119.8 85 71.8
CARHR033590 Cardamine hirsuta HOM05D002743 ORTHO05D002895 8.4e-25 118.2 80 71.2
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 2.1e-23 113.6 208 38.5
Thhalv10024137m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.3e-21 106.3 222 35.6
Carub.0151s0001 Capsella rubella HOM05D002743 ORTHO05D002895 1.7e-17 94.0 219 31.5
Carub.0007s1819 Capsella rubella HOM05D002743 ORTHO05D002895 4.6e-15 85.9 208 28.8
BcaB07g31193 Brassica carinata HOM05D002743 ORTHO05D002895 1.0e-14 84.7 182 34.6
AT3G28223 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.3e-14 84.3 212 31.6
AT1G49990 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.8e-14 84.0 224 30.4
BcaC04g22203 Brassica carinata HOM05D002743 ORTHO05D002895 1.1e-13 81.3 194 32.5
C09p22150 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-13 81.3 194 32.5
BolC9t55130H Brassica oleracea HOM05D002743 ORTHO05D002895 1.1e-13 81.3 194 32.5
Carub.0005s0386 Capsella rubella HOM05D002743 ORTHO05D002895 1.5e-13 80.9 211 28.4
Thhalv10013759m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.5e-13 80.9 226 25.2
Carub.0007s1889 Capsella rubella HOM05D002743 ORTHO05D002895 2.5e-13 80.1 214 29.0
BraA09t37413Z Brassica rapa HOM05D002743 ORTHO05D002895 3.3e-13 79.7 186 32.8
AT3G26010 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.3e-13 79.3 190 28.4
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.7e-13 79.0 221 31.2
AL1G67480 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.3e-12 77.8 196 28.6
C09p04580 Brassica napus HOM05D002743 ORTHO05D002895 6.3e-12 75.5 199 29.1
BolC9t53387H Brassica oleracea HOM05D002743 ORTHO05D002895 6.3e-12 75.5 199 29.1
A05p20390 Brassica napus HOM05D002743 ORTHO05D002895 8.2e-12 75.1 211 31.8
CARHR286560 Cardamine hirsuta HOM05D002743 ORTHO05D002895 8.2e-12 75.1 232 30.6
AL8G22310 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-11 74.7 205 28.3
AL34U10080 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.4e-11 74.3 205 27.3
A09p17800 Brassica napus HOM05D002743 ORTHO05D002895 1.8e-11 73.9 184 32.1
BraA05t20946Z Brassica rapa HOM05D002743 ORTHO05D002895 1.8e-11 73.9 211 32.2
BcaB07g33449 Brassica carinata HOM05D002743 ORTHO05D002895 3.1e-11 73.2 187 29.9
Thhalv10023522m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.1e-11 73.2 180 32.8
AT4G22430 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.1e-11 72.8 208 28.8
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 6.9e-11 72.0 218 27.1
CARHR025250 Cardamine hirsuta HOM05D002743 ORTHO05D002895 6.9e-11 72.0 215 26.5
BcaB07g33444 Brassica carinata HOM05D002743 ORTHO05D002895 9.0e-11 71.6 187 28.9
AL5G18350 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.2e-10 71.2 225 28.0
Carub.0005s0673 Capsella rubella HOM05D002743 ORTHO05D002895 3.4e-10 69.7 208 28.8
THA.LOC104823978 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 3.4e-10 69.7 153 31.4
BcaC04g23796 Brassica carinata HOM05D002743 ORTHO05D002895 5.9e-10 68.9 200 29.0
AT3G28330 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 7.7e-10 68.6 205 30.7
CARHR288610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.0e-09 68.2 42 73.8
AL34U10060 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.7e-09 67.4 151 29.1
BcaC08g43169 Brassica carinata HOM05D002743 ORTHO05D002895 5.0e-09 65.9 208 27.4
Carub.0005s0683 Capsella rubella HOM05D002743 ORTHO05D002895 1.4e-08 64.3 207 29.0
C06p04690 Brassica napus HOM05D002743 ORTHO05D002895 1.9e-08 63.9 208 27.4
AL5G18360 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.5e-08 63.5 174 29.9
CARHR147000 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.2e-08 62.8 128 32.0
CARHR229890 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.2e-08 62.8 230 26.5
CARHR158010 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.5e-08 62.4 212 28.8
BolC6t35601H Brassica oleracea HOM05D002743 ORTHO05D002895 9.4e-08 61.6 147 29.3
Carub.0005s0676 Capsella rubella HOM05D002743 ORTHO05D002895 1.2e-07 61.2 165 29.1
BcaB02g11118 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-07 60.8 128 32.8
CARHR286570 Cardamine hirsuta HOM05D002743 ORTHO05D002895 7.9e-07 58.5 175 28.0
BraA08t33514Z Brassica rapa HOM05D002743 ORTHO05D002895 1.8e-06 57.4 224 24.6
BcaC08g43172 Brassica carinata HOM05D002743 ORTHO05D002895 2.3e-06 57.0 135 28.1
QL02p078505 Quercus lobata HOM05D008898 ORTHO05D001155 8.8e-06 55.1 156 30.1


User provided reference genes

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