Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 5.4e-36 153.7 71 100.0
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 7.8e-27 123.2 71 78.9
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.7e-26 122.1 71 77.5
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 1.7e-26 122.1 71 77.5
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 2.3e-26 121.7 71 77.5
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.3e-26 121.7 71 76.1
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 3.0e-26 121.3 71 76.1
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 8.6e-26 119.8 71 74.6
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 8.6e-26 119.8 71 74.6
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 8.6e-26 119.8 71 74.6
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 8.6e-26 119.8 71 76.1
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.5e-25 119.0 71 74.6
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 1.5e-25 119.0 71 69.0
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 1.5e-25 119.0 71 69.0
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 2.5e-25 118.2 71 70.4
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 7.3e-25 116.7 71 70.4
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 7.3e-25 116.7 71 70.4
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 7.3e-25 116.7 71 70.4
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 9.5e-25 116.3 67 76.1
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 1.2e-24 115.9 71 73.2
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.2e-24 115.9 71 69.0
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 2.1e-24 115.2 71 69.0
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 2.8e-24 114.8 71 70.4
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 3.6e-24 114.4 71 67.6
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 4.7e-24 114.0 71 67.6
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 6.2e-24 113.6 71 66.2
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 8.0e-24 113.2 71 66.2
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 8.0e-24 113.2 71 66.2
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 8.0e-24 113.2 71 67.6
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 8.0e-24 113.2 71 66.2
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 8.0e-24 113.2 71 64.8
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 8.0e-24 113.2 71 69.0
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 1.1e-23 112.8 71 64.8
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 1.1e-23 112.8 71 69.0
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 1.1e-23 112.8 71 66.2
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 1.1e-23 112.8 71 67.6
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 1.1e-23 112.8 71 67.6
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.1e-23 112.8 71 67.6
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 1.4e-23 112.5 71 67.6
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.4e-23 112.5 71 67.6
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.4e-23 112.5 71 67.6
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.8e-23 112.1 71 64.8
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.8e-23 112.1 71 63.4
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.8e-23 112.1 71 64.8
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 1.8e-23 112.1 64 73.4
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 2.3e-23 111.7 71 64.8
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 2.3e-23 111.7 69 69.6
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 2.3e-23 111.7 71 66.2
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 2.3e-23 111.7 71 67.6
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 2.3e-23 111.7 71 64.8
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 3.1e-23 111.3 71 66.2
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 4.0e-23 110.9 71 66.2
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 4.0e-23 110.9 71 66.2
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 5.2e-23 110.5 71 63.4
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 5.2e-23 110.5 71 66.2
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 5.2e-23 110.5 71 64.8
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 5.2e-23 110.5 71 64.8
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 6.8e-23 110.2 71 64.8
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 8.9e-23 109.8 71 63.4
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 8.9e-23 109.8 71 66.2
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 8.9e-23 109.8 72 68.1
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 1.2e-22 109.4 71 64.8
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.2e-22 109.4 71 63.4
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 1.2e-22 109.4 71 64.8
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 1.2e-22 109.4 71 63.4
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 1.5e-22 109.0 67 68.7
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 1.5e-22 109.0 71 64.8
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 2.0e-22 108.6 71 63.4
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 3.4e-22 107.8 71 64.8
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 3.4e-22 107.8 71 64.8
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 3.4e-22 107.8 71 64.8
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 4.4e-22 107.5 71 64.8
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 4.4e-22 107.5 72 66.7
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 5.8e-22 107.1 71 64.8
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 1.7e-21 105.5 71 62.0
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 1.7e-21 105.5 71 62.0
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.7e-21 105.5 71 62.0
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.7e-21 105.5 71 62.0
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 2.2e-21 105.1 71 63.4
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 4.9e-21 104.0 68 67.6
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 1.4e-20 102.4 71 60.6
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 4.1e-20 100.9 74 62.2
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 4.1e-20 100.9 71 57.7
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 4.1e-20 100.9 67 62.7
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 1.6e-19 99.0 90 52.2
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 2.7e-19 98.2 66 60.6
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 3.5e-19 97.8 64 64.1
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.2e-16 89.4 61 67.2
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 3.1e-15 84.7 54 64.8
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 4.0e-15 84.3 97 44.3
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 1.2e-14 82.8 54 66.7
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 2.6e-14 81.6 71 47.9
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 5.8e-14 80.5 71 52.1
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 9.9e-14 79.7 46 73.9
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 1.3e-13 79.3 46 76.1
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.9e-13 78.2 68 51.5
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 4.9e-13 77.4 54 61.1
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 6.4e-13 77.0 56 53.6
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 1.1e-12 76.3 59 55.9
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 1.4e-12 75.9 54 63.0
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 1.9e-12 75.5 47 78.7
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 1.9e-12 75.5 53 56.6
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.4e-12 75.1 54 55.6
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.4e-12 75.1 54 55.6
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 2.4e-12 75.1 57 56.1
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 2.4e-12 75.1 55 54.5
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 4.1e-12 74.3 55 52.7
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 9.2e-12 73.2 42 73.8
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 1.6e-11 72.4 53 56.6
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 2.7e-11 71.6 52 53.8
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 4.6e-11 70.9 51 54.9
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 8.6e-10 66.6 71 46.5
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 1.5e-09 65.9 54 53.7
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 2.4e-07 58.5 36 61.1
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 2.0e-06 55.5 69 37.7


User provided reference genes

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