Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR287760 Cardamine hirsuta HOM05D012033 ORTHO05D012798 2.1e-67 258.8 127 100.0
CARHR256380 Cardamine hirsuta HOM05D000214 ORTHO05D012798 6.4e-40 167.5 140 63.6
TPR.G22532 Trifolium pratense HOM05D000214 ORTHO05D000131 2.4e-31 139.0 140 53.6
TPR.G17750 Trifolium pratense HOM05D000214 ORTHO05D000131 6.0e-30 134.4 140 53.6
TPR.G39998 Trifolium pratense HOM05D000214 ORTHO05D000131 2.3e-29 132.5 144 51.4
TPR.G38081 Trifolium pratense HOM05D000214 ORTHO05D012798 5.8e-25 117.9 132 51.5
TPR.G5679 Trifolium pratense HOM05D012033 ORTHO05D012798 4.2e-23 111.7 78 73.1
TPR.G29233 Trifolium pratense HOM05D012033 ORTHO05D012798 1.6e-22 109.8 78 71.8
CARHR257970 Cardamine hirsuta HOM05D012033 ORTHO05D012798 2.1e-22 109.4 60 88.3
TPR.G21833 Trifolium pratense HOM05D000214 ORTHO05D012798 6.0e-22 107.8 122 49.2
TPR.G22892 Trifolium pratense HOM05D000214 ORTHO05D000131 1.0e-21 107.1 89 62.9
CARHR183190 Cardamine hirsuta HOM05D012033 ORTHO05D012798 1.3e-21 106.7 65 78.5
TPR.G24697 Trifolium pratense HOM05D012033 ORTHO05D012798 5.1e-21 104.8 78 65.4
Medtr3g053420 Medicago truncatula HOM05D012033 ORTHO05D012798 2.8e-19 99.0 80 66.2
A08p04420 Brassica napus HOM05D012033 ORTHO05D012798 6.3e-19 97.8 63 73.0
BraA08t32469Z Brassica rapa HOM05D012033 ORTHO05D012798 6.3e-19 97.8 63 73.0
TPR.G32023 Trifolium pratense HOM05D000214 ORTHO05D000131 1.8e-18 96.3 78 62.8
CARHR052920 Cardamine hirsuta HOM05D012033 ORTHO05D012798 4.5e-17 91.7 54 85.2
CARHR152020 Cardamine hirsuta HOM05D012033 ORTHO05D012798 1.0e-16 90.5 52 80.8
CARHR214540 Cardamine hirsuta HOM05D000214 ORTHO05D000131 1.3e-16 90.1 124 46.0
Medtr0004s0250 Medicago truncatula HOM05D000214 ORTHO05D012798 1.1e-15 87.0 72 58.3
TPR.G1063 Trifolium pratense HOM05D012033 ORTHO05D012798 1.1e-15 87.0 110 43.6
CARHR180970 Cardamine hirsuta HOM05D012033 ORTHO05D012798 7.2e-15 84.3 51 82.4
TPR.G40311 Trifolium pratense HOM05D000214 ORTHO05D000131 1.6e-14 83.2 90 48.9
AL4G19930 Arabidopsis lyrata HOM05D006550 ORTHO05D012798 2.1e-14 82.8 54 70.4
Medtr3g068050 Medicago truncatula HOM05D006550 ORTHO05D008630 3.6e-14 82.0 97 49.5
TPR.G24564 Trifolium pratense HOM05D012033 ORTHO05D012798 4.6e-14 81.6 63 63.5
Lj3g0001624 Lotus japonicus HOM05D000214 ORTHO05D000131 3.9e-13 78.6 101 38.6
Hund26787 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.9e-13 78.6 83 45.8
AT3G29631 Arabidopsis thaliana HOM05D012033 ORTHO05D012798 6.7e-13 77.8 56 66.1
LjContig00141g0024663 Lotus japonicus HOM05D000214 ORTHO05D000131 3.3e-12 75.5 85 43.5
Hund10036 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.7e-12 74.7 100 39.0
Lj2g0003740 Lotus japonicus HOM05D000214 ORTHO05D000131 7.4e-12 74.3 85 43.5
Hund04667 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.7e-11 73.2 88 39.8
Ah.05g175980 Amaranthus hybridus HOM05D000214 ORTHO05D000131 3.7e-11 72.0 106 37.7
Lj1g0003300 Lotus japonicus HOM05D000214 ORTHO05D000131 6.3e-11 71.2 100 37.0
Lj1g0005097 Lotus japonicus HOM05D000214 ORTHO05D000131 6.3e-11 71.2 100 37.0
Hund17332 Selenicereus undatus HOM05D000214 ORTHO05D000131 6.3e-11 71.2 100 38.0
Lj5g0015099 Lotus japonicus HOM05D000214 ORTHO05D000131 1.1e-10 70.5 113 33.6
Hund13651 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.1e-10 70.5 100 37.0
Hund18460 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.4e-10 70.1 100 37.0
Hund23362 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.4e-10 70.1 100 37.0
Hund30207 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.4e-10 70.1 100 36.0
Hund30209 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.4e-10 70.1 100 36.0
Hund00684 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.8e-10 69.7 100 38.0
Hund21920 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.4e-10 69.3 100 37.0
Hund23756 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.4e-10 69.3 100 36.0
Hund25822 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.4e-10 69.3 118 31.4
Hund00503 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.1e-10 68.9 116 31.0
Hund11163 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.1e-10 68.9 116 31.0
Hund11925 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.1e-10 68.9 100 35.0
Hund20099 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.1e-10 68.9 116 31.0
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 4.1e-10 68.6 133 30.1
Hund26228 Selenicereus undatus HOM05D000214 ORTHO05D000131 4.1e-10 68.6 100 37.0
Hund03592 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.3e-10 68.2 100 35.0
Hund03698 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.3e-10 68.2 100 35.0
Hund04653 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.3e-10 68.2 100 36.0
Hund07454 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.3e-10 68.2 100 35.0
Hund11062 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.3e-10 68.2 100 35.0
Hund12507 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.3e-10 68.2 67 46.3
Hund18413 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.3e-10 68.2 100 35.0
Hund18649 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.3e-10 68.2 128 31.2
Hund24323 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.3e-10 68.2 100 35.0
Hund28535 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.3e-10 68.2 116 31.0
Hund28814 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.3e-10 68.2 135 30.4
Hund28816 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.3e-10 68.2 135 30.4
Hund02557 Selenicereus undatus HOM05D000214 ORTHO05D000131 6.9e-10 67.8 135 30.4
Hund11228 Selenicereus undatus HOM05D000214 ORTHO05D000131 6.9e-10 67.8 100 36.0
Hund07344 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.5e-09 66.6 100 35.0
BolC6t37577H Brassica oleracea HOM05D000214 ORTHO05D000131 2.0e-09 66.2 106 35.8
Hund26290 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.0e-09 66.2 100 36.0
Hund01049 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.6e-09 65.9 100 34.0
Hund07959 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.6e-09 65.9 100 35.0
Hund03806 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.4e-09 65.5 88 36.4
CARHR128850 Cardamine hirsuta HOM05D000214 ORTHO05D000131 5.9e-09 64.7 53 56.6
Hund10070 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.9e-09 64.7 99 36.4
BolC6t36508H Brassica oleracea HOM05D000214 ORTHO05D000131 7.7e-09 64.3 94 36.2
Hund20929 Selenicereus undatus HOM05D000214 ORTHO05D000131 7.7e-09 64.3 101 33.7
TPR.G31475 Trifolium pratense HOM05D000214 ORTHO05D000131 7.7e-09 64.3 67 47.8
CARHR152010 Cardamine hirsuta HOM05D000214 ORTHO05D000131 1.0e-08 63.9 50 66.0
Hund24895 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.0e-08 63.9 128 31.2
Hund24811 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.3e-08 63.5 99 34.3
TPR.G40762 Trifolium pratense HOM05D000214 ORTHO05D000131 1.3e-08 63.5 113 35.4
CARHR051850 Cardamine hirsuta HOM05D000214 ORTHO05D000131 1.7e-08 63.2 116 36.2
Lj1g0024846 Lotus japonicus HOM05D000214 ORTHO05D000131 1.7e-08 63.2 90 35.6
Hund18181 Selenicereus undatus HOM05D001220 ORTHO05D000110 1.7e-08 63.2 100 32.0
BolC3t18138H Brassica oleracea HOM05D000214 ORTHO05D000131 2.2e-08 62.8 114 34.2
BolC6t38794H Brassica oleracea HOM05D000214 ORTHO05D000131 2.2e-08 62.8 108 35.2
BolC6t39628H Brassica oleracea HOM05D000214 ORTHO05D000131 2.2e-08 62.8 127 33.1
Hund14694 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.2e-08 62.8 125 29.6
BolC3t14692H Brassica oleracea HOM05D000214 ORTHO05D000131 2.9e-08 62.4 127 34.6
BolC5t30705H Brassica oleracea HOM05D000214 ORTHO05D000131 2.9e-08 62.4 110 32.7
Hund08987 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.9e-08 62.4 108 30.6
BolC5t31403H Brassica oleracea HOM05D000214 ORTHO05D000131 3.8e-08 62.0 97 37.1
BolC6t36561H Brassica oleracea HOM05D000214 ORTHO05D000131 3.8e-08 62.0 110 32.7
BolC6t37380H Brassica oleracea HOM05D000214 ORTHO05D000131 3.8e-08 62.0 113 32.7
BolC8t46933H Brassica oleracea HOM05D000214 ORTHO05D000131 3.8e-08 62.0 113 34.5
BolC8t48814H Brassica oleracea HOM05D000214 ORTHO05D000131 3.8e-08 62.0 133 33.1
BolC8t49250H Brassica oleracea HOM05D000214 ORTHO05D000131 3.8e-08 62.0 101 33.7
BolC9t53772H Brassica oleracea HOM05D000214 ORTHO05D000131 3.8e-08 62.0 111 34.2
CARHR258710 Cardamine hirsuta HOM05D000214 ORTHO05D000131 3.8e-08 62.0 119 33.6
Hund11436 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.8e-08 62.0 87 34.5
TPR.G20885 Trifolium pratense HOM05D000214 ORTHO05D000131 3.8e-08 62.0 48 64.6
TPR.G297 Trifolium pratense HOM05D000214 ORTHO05D000131 3.8e-08 62.0 32 84.4
BcaB04g19150 Brassica carinata HOM05D000214 ORTHO05D000131 5.0e-08 61.6 109 33.9
BolC3t18867H Brassica oleracea HOM05D000214 ORTHO05D000131 5.0e-08 61.6 103 34.0
HanXRQChr14g0433871 Helianthus annuus HOM05D000214 ORTHO05D000131 5.0e-08 61.6 104 32.7
Hund26421 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.0e-08 61.6 95 32.6
CARHR257960 Cardamine hirsuta HOM05D000214 ORTHO05D000131 6.5e-08 61.2 53 56.6
Hund17012 Selenicereus undatus HOM05D000214 ORTHO05D000131 6.5e-08 61.2 99 33.3
SGA_v2.0_scaffold14G07050 Striga asiatica HOM05D000214 ORTHO05D000131 6.5e-08 61.2 117 29.1
BolC2t08088H Brassica oleracea HOM05D000214 ORTHO05D000131 8.5e-08 60.8 106 34.0
BolC5t34389H Brassica oleracea HOM05D000214 ORTHO05D000131 1.1e-07 60.5 103 34.0
CARHR058320 Cardamine hirsuta HOM05D000214 ORTHO05D000131 1.1e-07 60.5 130 34.6
Hund25102 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.1e-07 60.5 95 33.7
ECA233G1621 Erigeron canadensis HOM05D000214 ORTHO05D000131 1.4e-07 60.1 83 34.9
Os06g0597250 Oryza sativa ssp. japonica HOM05D000214 ORTHO05D000131 1.4e-07 60.1 96 34.4
BolC6t37439H Brassica oleracea HOM05D000214 ORTHO05D000131 1.9e-07 59.7 97 35.1
BolC7t45346H Brassica oleracea HOM05D000214 ORTHO05D000131 1.9e-07 59.7 133 30.8
ECA247G2137 Erigeron canadensis HOM05D000214 ORTHO05D000131 1.9e-07 59.7 79 34.2
Hund01741 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.9e-07 59.7 91 35.2
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.9e-07 59.7 99 31.3
BolC1t02183H Brassica oleracea HOM05D000214 ORTHO05D000131 2.5e-07 59.3 103 34.0
BolC7t43031H Brassica oleracea HOM05D000214 ORTHO05D000131 2.5e-07 59.3 108 32.4
BolC8t50968H Brassica oleracea HOM05D000214 ORTHO05D000131 3.2e-07 58.9 102 33.3
Cc09_g09240 Coffea canephora HOM05D000214 ORTHO05D000131 3.2e-07 58.9 96 33.3
Os11g0433800 Oryza sativa ssp. japonica HOM05D000214 ORTHO05D000131 3.2e-07 58.9 136 27.9
Hund26345 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.2e-07 58.9 100 33.0
TWI53G1526 Tripterygium wilfordii HOM05D000214 ORTHO05D000131 3.2e-07 58.9 93 38.7
BcaB08g35779 Brassica carinata HOM05D000214 ORTHO05D000131 4.2e-07 58.5 97 35.1
BolC9t53925H Brassica oleracea HOM05D000214 ORTHO05D000131 4.2e-07 58.5 97 34.0
QL02p046053 Quercus lobata HOM05D001576 ORTHO05D000131 4.2e-07 58.5 106 31.1
TPR.G28142 Trifolium pratense HOM05D000214 ORTHO05D000131 4.2e-07 58.5 32 78.1
TWI14G0790 Tripterygium wilfordii HOM05D000214 ORTHO05D000131 4.2e-07 58.5 99 34.3
TWI79G0227 Tripterygium wilfordii HOM05D000214 ORTHO05D000131 4.2e-07 58.5 99 34.3
BolC6t36522H Brassica oleracea HOM05D000214 ORTHO05D000131 5.5e-07 58.2 97 34.0
BolC9t57368H Brassica oleracea HOM05D000214 ORTHO05D000131 5.5e-07 58.2 108 31.5
HanXRQChr07g0192301 Helianthus annuus HOM05D000214 ORTHO05D000131 5.5e-07 58.2 100 31.0
HanXRQChr08g0217591 Helianthus annuus HOM05D000214 ORTHO05D000131 5.5e-07 58.2 100 31.0
HanXRQChr15g0478871 Helianthus annuus HOM05D000214 ORTHO05D000131 5.5e-07 58.2 100 31.0
Hund20762 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.5e-07 58.2 100 32.0
Hund22206 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.5e-07 58.2 100 33.0
BolC3t15015H Brassica oleracea HOM05D000214 ORTHO05D000131 7.2e-07 57.8 103 33.0
BolC3t20955H Brassica oleracea HOM05D000214 ORTHO05D000131 7.2e-07 57.8 98 32.7
BolC6t38684H Brassica oleracea HOM05D000214 ORTHO05D000131 7.2e-07 57.8 126 31.7
HanXRQChr13g0405251 Helianthus annuus HOM05D000214 ORTHO05D000131 7.2e-07 57.8 133 29.3
BolC9t55797H Brassica oleracea HOM05D000214 ORTHO05D000131 9.4e-07 57.4 108 32.4
Os07g0546750 Oryza sativa ssp. japonica HOM05D000214 ORTHO05D000131 9.4e-07 57.4 145 27.6
TWI79G0691 Tripterygium wilfordii HOM05D000214 ORTHO05D000131 9.4e-07 57.4 109 36.7
BcaB08g35561 Brassica carinata HOM05D000214 ORTHO05D000131 1.2e-06 57.0 129 31.0
BolC1t02351H Brassica oleracea HOM05D000214 ORTHO05D000131 1.2e-06 57.0 98 32.7
BolC5t34055H Brassica oleracea HOM05D000214 ORTHO05D000131 1.2e-06 57.0 97 34.0
TPR.G31250 Trifolium pratense HOM05D000214 ORTHO05D013285 1.2e-06 57.0 33 78.8
BolC8t48723H Brassica oleracea HOM05D000214 ORTHO05D000131 1.6e-06 56.6 109 31.2
BolC9t57662H Brassica oleracea HOM05D000214 ORTHO05D000131 1.6e-06 56.6 99 32.3
BolC9t58426H Brassica oleracea HOM05D000214 ORTHO05D000131 1.6e-06 56.6 97 33.0
HanXRQChr04g0114761 Helianthus annuus HOM05D000214 ORTHO05D000131 1.6e-06 56.6 91 33.0
HanXRQChr06g0163931 Helianthus annuus HOM05D000214 ORTHO05D000131 1.6e-06 56.6 133 29.3
HanXRQChr15g0486041 Helianthus annuus HOM05D000214 ORTHO05D000131 1.6e-06 56.6 133 29.3
Lj1g0010084 Lotus japonicus HOM05D000214 ORTHO05D000131 1.6e-06 56.6 81 37.0
Hund09646 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.6e-06 56.6 50 58.0
BolC3t20860H Brassica oleracea HOM05D000214 ORTHO05D000131 2.1e-06 56.2 129 30.2
CANSAT78G2396 Cannabis sativa HOM05D000214 ORTHO05D000131 2.1e-06 56.2 91 36.3
ECA233G4202 Erigeron canadensis HOM05D000214 ORTHO05D000131 2.1e-06 56.2 76 35.5
FvH4_5g29682 Fragaria vesca HOM05D000214 ORTHO05D000131 2.1e-06 56.2 96 33.3
Hund00547 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.1e-06 56.2 125 27.2
TWI60G1568 Tripterygium wilfordii HOM05D000214 ORTHO05D000131 2.1e-06 56.2 99 33.3
BolC2t11444H Brassica oleracea HOM05D000214 ORTHO05D000131 2.7e-06 55.8 103 32.0
BolC3t19989H Brassica oleracea HOM05D000214 ORTHO05D000131 2.7e-06 55.8 97 30.9
BolC6t36128H Brassica oleracea HOM05D000214 ORTHO05D000131 2.7e-06 55.8 94 34.0
HanXRQChr05g0144501 Helianthus annuus HOM05D000214 ORTHO05D000131 2.7e-06 55.8 91 31.9
HanXRQChr11g0336001 Helianthus annuus HOM05D000214 ORTHO05D000131 2.7e-06 55.8 100 31.0
BcaB05g21784 Brassica carinata HOM05D000214 ORTHO05D000131 3.6e-06 55.5 99 33.3
BolC7t43838H Brassica oleracea HOM05D000214 ORTHO05D000131 3.6e-06 55.5 98 31.6
CANSAT01G2145 Cannabis sativa HOM05D000214 ORTHO05D000131 3.6e-06 55.5 91 36.3
Rhsim01G0115100 Rhododendron simsii HOM05D000214 ORTHO05D000131 3.6e-06 55.5 96 30.2
Hund12980 Selenicereus undatus HOM05D000214 ORTHO05D000131 3.6e-06 55.5 32 68.8
Atru.chr8.364 Acer truncatum HOM05D000214 ORTHO05D000131 4.7e-06 55.1 91 35.2
BolC9t57022H Brassica oleracea HOM05D000214 ORTHO05D000131 4.7e-06 55.1 127 29.9
CARHR133710 Cardamine hirsuta HOM05D000214 ORTHO05D000131 4.7e-06 55.1 53 43.4
CARHR144660 Cardamine hirsuta HOM05D000214 ORTHO05D000131 4.7e-06 55.1 130 33.1
QL07p029514 Quercus lobata HOM05D000214 ORTHO05D000131 4.7e-06 55.1 100 30.0
BolC1t04427H Brassica oleracea HOM05D000214 ORTHO05D000131 6.1e-06 54.7 97 29.9
TPR.G29535 Trifolium pratense HOM05D000214 ORTHO05D000131 6.1e-06 54.7 53 49.1
BolC9t59154H Brassica oleracea HOM05D000214 ORTHO05D000131 7.9e-06 54.3 127 28.3
Ca_07345_v3 Cicer arietinum L. HOM05D000214 ORTHO05D000131 7.9e-06 54.3 97 32.0
Hund14644 Selenicereus undatus HOM05D000214 ORTHO05D000131 7.9e-06 54.3 33 63.6
TWI32G0887 Tripterygium wilfordii HOM05D000214 ORTHO05D000131 7.9e-06 54.3 107 31.8
TWI32G1003 Tripterygium wilfordii HOM05D000214 ORTHO05D000131 7.9e-06 54.3 97 30.9


User provided reference genes

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