Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR287730 Cardamine hirsuta HOM05D001826 ORTHO05D007448 2.8e-25 117.9 61 100.0
AL6G48340 Arabidopsis lyrata HOM05D001826 ORTHO05D007448 4.6e-20 100.5 61 88.5
Carub.0006s3276 Capsella rubella HOM05D001826 ORTHO05D007448 6.1e-20 100.1 61 86.9
AT4G04850 Arabidopsis thaliana HOM05D001826 ORTHO05D007448 3.0e-19 97.8 61 85.2
Aa31LG9G9650 Aethionema arabicum HOM05D001826 ORTHO05D007448 1.1e-18 95.9 61 83.6
Sp6g04130 Schrenkiella parvula HOM05D001826 ORTHO05D007448 1.3e-17 92.4 61 85.2
BcaB01g01839 Brassica carinata HOM05D001826 ORTHO05D007448 1.6e-17 92.0 61 85.2
CARHR252720 Cardamine hirsuta HOM05D001826 ORTHO05D007448 2.8e-17 91.3 61 78.7
BcaC04g21330 Brassica carinata HOM05D001826 ORTHO05D007448 8.2e-17 89.7 61 83.6
A09p26080 Brassica napus HOM05D001826 ORTHO05D007448 8.2e-17 89.7 61 83.6
C09p33100 Brassica napus HOM05D001826 ORTHO05D007448 8.2e-17 89.7 61 83.6
BolC9t56144H Brassica oleracea HOM05D001826 ORTHO05D007448 8.2e-17 89.7 61 83.6
BraA09t38175Z Brassica rapa HOM05D001826 ORTHO05D007448 8.2e-17 89.7 61 83.6
Thhalv10028445m.g Eutrema salsugineum HOM05D001826 ORTHO05D007448 8.2e-17 89.7 61 83.6
EL10Ac9g22137 Beta vulgaris HOM05D001826 ORTHO05D007448 1.1e-16 89.4 61 75.4
Hund06483 Selenicereus undatus HOM05D001826 ORTHO05D007448 1.4e-16 89.0 61 75.4
Cc02_g20480 Coffea canephora HOM05D001826 ORTHO05D007448 1.8e-16 88.6 61 77.0
THA.LOC104813027 Tarenaya hassleriana HOM05D001826 ORTHO05D007448 2.4e-16 88.2 61 77.0
CSS0011209 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D007448 3.1e-16 87.8 61 77.0
CSS0048830 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D007448 3.1e-16 87.8 61 77.0
GSVIVG01005667001 Vitis vinifera HOM05D001826 ORTHO05D007448 3.1e-16 87.8 61 78.7
Cpa.g.sc20.55 Carica papaya HOM05D001826 ORTHO05D007448 4.1e-16 87.4 60 76.7
CiPaw.05G025600 Carya illinoinensis HOM05D001826 ORTHO05D007448 5.3e-16 87.0 61 77.0
ClCG09G016370 Citrullus lanatus HOM05D001826 ORTHO05D007448 5.3e-16 87.0 61 75.4
SGA_v2.0_scaffold32G12958 Striga asiatica HOM05D001826 ORTHO05D007448 6.9e-16 86.7 61 77.0
TAR625G0568 Trochodendron aralioides HOM05D001826 ORTHO05D007448 6.9e-16 86.7 61 78.7
MELO3C018570.2 Cucumis melo HOM05D001826 ORTHO05D007448 9.0e-16 86.3 61 75.4
CsaV3_7G007280 Cucumis sativus L. HOM05D001826 ORTHO05D007448 9.0e-16 86.3 61 75.4
Sc13g0008110 Simmondsia chinensis HOM05D001826 ORTHO05D007448 9.0e-16 86.3 61 72.1
Gohir.A03G212500 Gossypium hirsutum HOM05D001826 ORTHO05D007448 1.2e-15 85.9 61 75.4
Gohir.D02G234000 Gossypium hirsutum HOM05D001826 ORTHO05D007448 1.2e-15 85.9 61 75.4
Gorai.005G262000 Gossypium raimondii HOM05D001826 ORTHO05D007448 1.2e-15 85.9 61 75.4
Thecc.02G037000 Theobroma cacao HOM05D001826 ORTHO05D007448 1.2e-15 85.9 61 75.4
CSS0001920 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D007448 1.5e-15 85.5 61 75.4
CSS0031120 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D007448 1.5e-15 85.5 61 75.4
TAR381G0061 Trochodendron aralioides HOM05D001826 ORTHO05D007448 1.5e-15 85.5 61 77.0
TAR381G1682 Trochodendron aralioides HOM05D001826 ORTHO05D007448 1.5e-15 85.5 61 77.0
MD05G1050600 Malus domestica HOM05D001826 ORTHO05D007448 2.0e-15 85.1 61 75.4
Medtr4g092790 Medicago truncatula HOM05D001826 ORTHO05D007448 2.0e-15 85.1 61 73.8
Oeu025232.1 Olea europaea HOM05D001826 ORTHO05D007448 2.0e-15 85.1 61 73.8
ATR0767G253 Amborella trichopoda HOM05D001826 ORTHO05D007448 2.6e-15 84.7 61 75.4
Aqoxy7G00079 Aquilegia oxysepala HOM05D001826 ORTHO05D007448 2.6e-15 84.7 61 75.4
MD10G1058200 Malus domestica HOM05D001826 ORTHO05D007448 2.6e-15 84.7 61 75.4
Oeu014210.1 Olea europaea HOM05D001826 ORTHO05D007448 2.6e-15 84.7 61 73.8
Sed0020177 Sechium edule HOM05D001826 ORTHO05D007448 2.6e-15 84.7 61 73.8
TPR.G16905 Trifolium pratense HOM05D001826 ORTHO05D007448 2.6e-15 84.7 61 72.1
Cfa004776 Carpinus fangiana HOM05D001826 ORTHO05D007448 3.4e-15 84.3 61 73.8
Haze_10373 Corylus avellana HOM05D001826 ORTHO05D007448 3.4e-15 84.3 61 73.8
TWI59G0620 Tripterygium wilfordii HOM05D001826 ORTHO05D007448 3.4e-15 84.3 61 75.4
CAN.G336.1 Capsicum annuum HOM05D001826 ORTHO05D007448 4.5e-15 84.0 61 73.8
Lalb_Chr09g0327001 Lupinus albus HOM05D001826 ORTHO05D007448 4.5e-15 84.0 61 72.1
MBI16_g26724_MAGBIO Magnolia biondii HOM05D001826 ORTHO05D007448 4.5e-15 84.0 61 75.4
Nn1g05773 Nelumbo nucifera HOM05D001826 ORTHO05D007448 4.5e-15 84.0 61 75.4
Potri.009G080800 Populus trichocarpa HOM05D001826 ORTHO05D007448 4.5e-15 84.0 61 73.8
Actinidia00328 Actinidia chinensis HOM05D001826 ORTHO05D007448 5.9e-15 83.6 61 73.8
arahy.Tifrunner.gnm1.ann1.P6A6TR Arachis hypogaea HOM05D001826 ORTHO05D007448 5.9e-15 83.6 61 72.1
arahy.Tifrunner.gnm1.ann1.Z2GU4A Arachis hypogaea HOM05D001826 ORTHO05D007448 5.9e-15 83.6 61 72.1
AUR62027069 Chenopodium quinoa HOM05D001826 ORTHO05D007448 5.9e-15 83.6 61 73.8
Manes.10G091900 Manihot esculenta HOM05D001826 ORTHO05D007448 7.7e-15 83.2 61 73.8
Mapoly0035s0114 Marchantia polymorpha HOM05D001826 ORTHO05D007448 7.7e-15 83.2 60 76.7
HPP92_019547 Vanilla planifolia HOM05D001826 ORTHO05D007448 7.7e-15 83.2 61 70.5
CDE02G4107 Ceratophyllum demersum HOM05D001826 ORTHO05D007448 1.0e-14 82.8 61 73.8
CDE04G3474 Ceratophyllum demersum HOM05D001826 ORTHO05D007448 1.0e-14 82.8 61 73.8
Duzib248G0138 Durio zibethinus HOM05D001826 ORTHO05D007448 1.0e-14 82.8 61 73.8
Eucgr.G01108 Eucalyptus grandis HOM05D001826 ORTHO05D007448 1.0e-14 82.8 61 72.1
Solyc11g044250.3 Solanum lycopersicum HOM05D001826 ORTHO05D007448 1.0e-14 82.8 61 73.8
Sopen11g019710 Solanum pennellii HOM05D001826 ORTHO05D007448 1.0e-14 82.8 61 73.8
vmacro01904 Vaccinium macrocarpon HOM05D001826 ORTHO05D007448 1.0e-14 82.8 61 73.8
MSTRG.20246 Avicennia marina HOM05D001826 ORTHO05D007448 1.3e-14 82.4 61 70.5
QL11p027607 Quercus lobata HOM05D001826 ORTHO05D007448 1.3e-14 82.4 61 72.1
Glyma.07G184800 Glycine max HOM05D001826 ORTHO05D007448 1.7e-14 82.0 61 70.5
Glyma.08G064600 Glycine max HOM05D001826 ORTHO05D007448 1.7e-14 82.0 61 70.5
Prupe.8G077000 Prunus persica HOM05D001826 ORTHO05D007448 1.7e-14 82.0 61 73.8
arahy.Tifrunner.gnm1.ann1.HUBH2G Arachis hypogaea HOM05D001826 ORTHO05D007448 2.2e-14 81.6 60 68.3
Psat7g103920 Pisum sativum HOM05D001826 ORTHO05D007448 2.2e-14 81.6 61 68.9
Ca_18419_v3 Cicer arietinum L. HOM05D001826 ORTHO05D007448 2.9e-14 81.3 61 68.9
Ca_18434_v3 Cicer arietinum L. HOM05D001826 ORTHO05D007448 2.9e-14 81.3 61 68.9
DCAR_021888 Daucus carota HOM05D001826 ORTHO05D007448 2.9e-14 81.3 61 73.8
Dinv08956 Davidia involucrata HOM05D001826 ORTHO05D007448 2.9e-14 81.3 61 72.1
Lj4g0008995 Lotus japonicus HOM05D001826 ORTHO05D007448 2.9e-14 81.3 61 63.9
unitig_46.g18834 Utricularia gibba HOM05D001826 ORTHO05D007448 2.9e-14 81.3 59 71.2
FvH4_2g11000 Fragaria vesca HOM05D001826 ORTHO05D007448 3.8e-14 80.9 61 72.1
FAN20G0276 Fragaria x ananassa HOM05D001826 ORTHO05D007448 3.8e-14 80.9 61 72.1
FAN24G1862 Fragaria x ananassa HOM05D001826 ORTHO05D007448 3.8e-14 80.9 61 72.1
SalBow6G1497 Salvia bowleyana HOM05D001826 ORTHO05D007448 3.8e-14 80.9 61 70.5
Atru.chr6.1383 Acer truncatum HOM05D001826 ORTHO05D007448 5.0e-14 80.5 61 70.5
CANSAT54G1166 Cannabis sativa HOM05D001826 ORTHO05D007448 5.0e-14 80.5 61 70.5
HanXRQChr08g0227131 Helianthus annuus HOM05D001826 ORTHO05D007448 6.5e-14 80.1 61 73.8
Ciclev10027852m.g Citrus clementina HOM05D001826 ORTHO05D007448 8.5e-14 79.7 61 68.9
Lj5A224T62 Lonicera japonica HOM05D001826 ORTHO05D007448 8.5e-14 79.7 61 72.1
AagrBONN_evm.TU.Sc2ySwM_369.491 Anthoceros agrestis HOM05D001826 ORTHO05D007448 1.1e-13 79.3 60 70.0
Ah.01g024250 Amaranthus hybridus HOM05D001826 ORTHO05D007448 1.4e-13 79.0 61 70.5
COL.COLO4_17848 Corchorus olitorius HOM05D001826 ORTHO05D007448 1.4e-13 79.0 61 70.5
Lsat_1_v5_gn_7_83220 Lactuca sativa HOM05D001826 ORTHO05D007448 1.4e-13 79.0 61 73.8
Peaxi162Scf00152g00736 Petunia axillaris HOM05D001826 ORTHO05D007448 1.9e-13 78.6 60 73.3
RcHm_v2.0_Chr6g0269211 Rosa chinensis HOM05D001826 ORTHO05D007448 1.9e-13 78.6 61 70.5
Migut.B00510 Erythranthe guttata HOM05D001826 ORTHO05D007448 3.2e-13 77.8 61 70.5
ECA236G4009 Erigeron canadensis HOM05D001826 ORTHO05D007448 4.2e-13 77.4 61 73.8
Os12g0617800 Oryza sativa ssp. japonica HOM05D001826 ORTHO05D007448 5.5e-13 77.0 61 65.6
Phvul.002G216200 Phaseolus vulgaris HOM05D001826 ORTHO05D007448 5.5e-13 77.0 61 65.6
SMO147G0144 Selaginella moellendorffii HOM05D001826 ORTHO05D007448 5.5e-13 77.0 60 68.3
Zm00001eb134700 Zea mays HOM05D001826 ORTHO05D007448 5.5e-13 77.0 61 63.9
PSO210G3732 Papaver somniferum HOM05D001826 ORTHO05D007448 9.4e-13 76.3 61 73.8
PSO761G0577 Papaver somniferum HOM05D001826 ORTHO05D007448 9.4e-13 76.3 61 73.8
PGR042G3754 Punica granatum HOM05D001826 ORTHO05D007448 2.1e-12 75.1 61 70.5
AUR62030910 Chenopodium quinoa HOM05D001826 ORTHO05D007448 2.7e-12 74.7 61 70.5
Pp3c8_16170 Physcomitrium patens HOM05D001826 ORTHO05D007448 1.4e-11 72.4 60 60.0
Pp3c24_12350 Physcomitrium patens HOM05D001826 ORTHO05D007448 3.0e-11 71.2 60 58.3
Nitab4.5_0001093g0060 Nicotiana tabacum HOM05D001826 ORTHO05D007448 1.5e-10 68.9 61 70.5
SEGI_26337 Sequoiadendron giganteum HOM05D001826 ORTHO05D007448 3.7e-09 64.3 51 70.6


User provided reference genes

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