Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR287410 Cardamine hirsuta HOM05D007792 ORTHO05D009931 2.3e-48 195.3 100 100.0
AL2G21630 Arabidopsis lyrata HOM05D007792 ORTHO05D009931 4.4e-28 127.9 73 90.4
ATCG00660 Arabidopsis thaliana HOM05D007792 ORTHO05D009931 4.4e-28 127.9 73 90.4
CARHR282170 Cardamine hirsuta HOM05D007792 ORTHO05D009931 4.4e-28 127.9 73 90.4
BNapus_Darmor_BZH_scaffold_287p00200 Brassica napus HOM05D007792 ORTHO05D009931 5.4e-26 120.9 71 88.7
C02p43590 Brassica napus HOM05D007792 ORTHO05D009931 5.4e-26 120.9 71 88.7
C06p22950 Brassica napus HOM05D007792 ORTHO05D009931 5.4e-26 120.9 71 88.7
BolSC29t60477H Brassica oleracea HOM05D007792 ORTHO05D009931 5.4e-26 120.9 71 88.7
BolSC29t60598H Brassica oleracea HOM05D007792 ORTHO05D009931 5.4e-26 120.9 71 88.7
BolSC47t61086H Brassica oleracea HOM05D007792 ORTHO05D009931 5.4e-26 120.9 71 88.7
BraSC138t45565Z Brassica rapa HOM05D007792 ORTHO05D009931 5.4e-26 120.9 71 88.7
BraSC25t45855Z Brassica rapa HOM05D007792 ORTHO05D009931 5.4e-26 120.9 71 88.7
BraSC58t46432Z Brassica rapa HOM05D007792 ORTHO05D009931 5.4e-26 120.9 71 88.7
Solyc11g063440.3 Solanum lycopersicum HOM05D007792 ORTHO05D009931 5.4e-26 120.9 104 64.4
PSO548G0123 Papaver somniferum HOM05D007792 ORTHO05D009931 3.5e-25 118.2 84 75.0
Solyc11g063720.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 3.5e-25 118.2 104 63.5
BolC6t36199H Brassica oleracea HOM05D007792 ORTHO05D009931 1.0e-24 116.7 102 64.7
Nn021s41529 Nelumbo nucifera HOM05D007792 ORTHO05D009931 1.0e-24 116.7 89 70.8
Nn6g32081 Nelumbo nucifera HOM05D007792 ORTHO05D009931 1.0e-24 116.7 89 70.8
Oeu028775.1 Olea europaea HOM05D007792 ORTHO05D009931 1.0e-24 116.7 86 74.4
Oeu058366.1 Olea europaea HOM05D007792 ORTHO05D009931 1.0e-24 116.7 86 74.4
RcHm_v2.0_CPg0502001 Rosa chinensis HOM05D007792 ORTHO05D009931 1.0e-24 116.7 86 73.3
Solyc00g180440.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 1.0e-24 116.7 75 80.0
CAN.G1148.9 Capsicum annuum HOM05D007792 ORTHO05D009931 1.3e-24 116.3 75 80.0
CAN.G2018.13 Capsicum annuum HOM05D007792 ORTHO05D009931 1.3e-24 116.3 75 80.0
CAN.G438.83 Capsicum annuum HOM05D007792 ORTHO05D009931 1.3e-24 116.3 75 80.0
Gohir.A12G229400 Gossypium hirsutum HOM05D007792 ORTHO05D009931 2.3e-24 115.5 75 80.0
Gohir.D01G101995 Gossypium hirsutum HOM05D007792 ORTHO05D009931 3.0e-24 115.2 75 80.0
Solyc11g063660.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 3.0e-24 115.2 104 61.5
C04p42970 Brassica napus HOM05D007792 ORTHO05D009931 5.1e-24 114.4 71 85.9
Oeu053978.1 Olea europaea HOM05D007792 ORTHO05D009931 5.1e-24 114.4 86 73.3
Sc09g0009720 Simmondsia chinensis HOM05D007792 ORTHO05D001488 3.3e-23 111.7 69 81.2
BolC2t08921H Brassica oleracea HOM05D007792 ORTHO05D009931 4.3e-23 111.3 71 83.1
SalBow1G1024 Salvia bowleyana HOM05D007792 ORTHO05D009931 5.6e-23 110.9 86 69.8
PGR111G0084 Punica granatum HOM05D007792 ORTHO05D009931 7.3e-23 110.5 75 76.0
DCAR_032507 Daucus carota HOM05D007792 ORTHO05D009931 9.6e-23 110.2 97 63.9
HanXRQChr01g0020291 Helianthus annuus HOM05D007792 ORTHO05D009931 1.3e-22 109.8 86 69.8
HanXRQChr04g0094291 Helianthus annuus HOM05D007792 ORTHO05D009931 1.3e-22 109.8 86 69.8
HanXRQChr04g0095111 Helianthus annuus HOM05D007792 ORTHO05D009931 1.3e-22 109.8 86 69.8
HanXRQChr10g0283611 Helianthus annuus HOM05D007792 ORTHO05D009931 1.3e-22 109.8 86 69.8
HanXRQChr10g0284301 Helianthus annuus HOM05D007792 ORTHO05D009931 1.3e-22 109.8 86 69.8
HanXRQChr10g0318141 Helianthus annuus HOM05D007792 ORTHO05D009931 1.3e-22 109.8 86 69.8
HanXRQChr11g0326891 Helianthus annuus HOM05D007792 ORTHO05D009931 1.3e-22 109.8 86 69.8
HanXRQCPg0580101 Helianthus annuus HOM05D007792 ORTHO05D009931 1.3e-22 109.8 86 69.8
BraSC58t46493Z Brassica rapa HOM05D007792 ORTHO05D009931 1.6e-22 109.4 73 82.2
Sed0026344 Sechium edule HOM05D007792 ORTHO05D009931 2.1e-22 109.0 86 68.6
Sed0027103 Sechium edule HOM05D007792 ORTHO05D009931 2.1e-22 109.0 86 68.6
Sed0001088 Sechium edule HOM05D007792 ORTHO05D009931 2.8e-22 108.6 69 79.7
MELO3C027088.2 Cucumis melo HOM05D007792 ORTHO05D009931 6.2e-22 107.5 86 67.4
Glyma.12G232100 Glycine max HOM05D007792 ORTHO05D009931 1.8e-21 105.9 88 64.8
HanXRQChr02g0052571 Helianthus annuus HOM05D007792 ORTHO05D009931 2.4e-21 105.5 86 67.4
Phvul.002G090500 Phaseolus vulgaris HOM05D007792 ORTHO05D009931 2.4e-21 105.5 88 64.8
Lalb_Chr07g0192061 Lupinus albus HOM05D007792 ORTHO05D009931 4.0e-21 104.8 69 75.4
Lalb_Chr08g0237911 Lupinus albus HOM05D007792 ORTHO05D009931 4.0e-21 104.8 69 75.4
Sc22g0003450 Simmondsia chinensis HOM05D002194 ORTHO05D002840 6.9e-21 104.0 69 76.8
Lalb_Chr23g0274331 Lupinus albus HOM05D007792 ORTHO05D009931 2.6e-20 102.1 89 64.0
Sed0005117 Sechium edule HOM05D007792 ORTHO05D009931 2.6e-20 102.1 69 72.5
Gohir.A02G053101 Gossypium hirsutum HOM05D007792 ORTHO05D009931 5.8e-20 100.9 71 73.2
LjContig00318g0025275 Lotus japonicus HOM05D007792 ORTHO05D009931 9.9e-20 100.1 69 72.5
Aqoxy2G00943 Aquilegia oxysepala HOM05D007792 ORTHO05D009931 1.3e-19 99.8 71 71.8
arahy.Tifrunner.gnm1.ann1.H056B9 Arachis hypogaea HOM05D007792 ORTHO05D009931 2.2e-19 99.0 73 68.5
Medtr4g034720 Medicago truncatula HOM05D007792 ORTHO05D009931 6.4e-19 97.4 69 68.1
Medtr7g085940 Medicago truncatula HOM05D007792 ORTHO05D009931 6.4e-19 97.4 69 68.1
MELO3C028023.2 Cucumis melo HOM05D007792 ORTHO05D009931 4.6e-17 91.3 78 62.8
Gohir.D09G044333 Gossypium hirsutum HOM05D007792 ORTHO05D009931 6.0e-17 90.9 60 76.7
Gohir.A11G230404 Gossypium hirsutum HOM05D007792 ORTHO05D009931 3.0e-16 88.6 60 75.0
Gorai.011G046100 Gossypium raimondii HOM05D007792 ORTHO05D009931 3.3e-15 85.1 86 54.7
Gorai.012G094800 Gossypium raimondii HOM05D007792 ORTHO05D009931 2.1e-14 82.4 57 75.4
SGA_v2.0_scaffold479G52248 Striga asiatica HOM05D007792 ORTHO05D009931 1.4e-13 79.7 85 56.5
Gohir.D04G084960 Gossypium hirsutum HOM05D007792 ORTHO05D009931 2.4e-13 79.0 57 73.7
EL10Ac4g08243 Beta vulgaris HOM05D007792 ORTHO05D009931 9.0e-13 77.0 74 56.8
arahy.Tifrunner.gnm1.ann1.81C611 Arachis hypogaea HOM05D007792 ORTHO05D009931 1.3e-11 73.2 55 67.3
MELO3C028123.2 Cucumis melo HOM05D007792 ORTHO05D009931 1.3e-11 73.2 62 61.3
Glyma.01G201700 Glycine max HOM05D007792 ORTHO05D009931 2.2e-11 72.4 69 58.0
BolC8t52434H Brassica oleracea HOM05D007792 ORTHO05D009931 2.9e-11 72.0 56 73.2
MD11G1294300 Malus domestica HOM05D007792 ORTHO05D009931 3.2e-10 68.6 42 85.7
arahy.Tifrunner.gnm1.ann1.4Z8JUD Arachis hypogaea HOM05D007792 ORTHO05D009931 9.3e-10 67.0 46 69.6
Eucgr.D02558 Eucalyptus grandis HOM05D007792 ORTHO05D009931 1.6e-09 66.2 65 61.5
Gorai.002G210300 Gossypium raimondii HOM05D007792 ORTHO05D009931 2.1e-09 65.9 52 67.3
Gohir.A10G134900 Gossypium hirsutum HOM05D007792 ORTHO05D009931 3.5e-09 65.1 43 79.1
Gohir.D01G169022 Gossypium hirsutum HOM05D007792 ORTHO05D009931 5.1e-08 61.2 52 65.4
Gorai.001G063300 Gossypium raimondii HOM05D007792 ORTHO05D009931 6.7e-08 60.8 39 76.9
Nitab4.5_0007104g0100 Nicotiana tabacum HOM05D007792 ORTHO05D009931 6.2e-06 54.3 48 58.3


User provided reference genes

Program Settings