Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR285870 Cardamine hirsuta HOM05D006754 ORTHO05D008403 1.6e-230 802.4 397 100.0
AL8G35980 Arabidopsis lyrata HOM05D006754 ORTHO05D008403 2.9e-211 738.4 397 90.9
AT5G59500 Arabidopsis thaliana HOM05D006754 ORTHO05D008403 2.9e-211 738.4 397 90.2
Thhalv10015639m.g Eutrema salsugineum HOM05D006754 ORTHO05D008403 1.5e-207 726.1 397 89.2
Sp6g21200 Schrenkiella parvula HOM05D006754 ORTHO05D008403 3.4e-204 714.9 397 89.2
Carub.0008s2018 Capsella rubella HOM05D006754 ORTHO05D008403 4.6e-201 704.5 399 87.0
BcaC04g19764 Brassica carinata HOM05D006754 ORTHO05D008403 6.2e-190 667.5 397 83.6
C09p51900 Brassica napus HOM05D006754 ORTHO05D008403 6.2e-190 667.5 397 83.6
BolC9t58053H Brassica oleracea HOM05D006754 ORTHO05D008403 6.2e-190 667.5 397 83.6
Aa31LG1G11840 Aethionema arabicum HOM05D006754 ORTHO05D008403 1.4e-189 666.4 397 81.6
A10p16710 Brassica napus HOM05D006754 ORTHO05D008403 4.0e-189 664.8 397 83.4
BcaB08g36252 Brassica carinata HOM05D006754 ORTHO05D008403 4.4e-188 661.4 397 83.4
BraA10t43752Z Brassica rapa HOM05D006754 ORTHO05D008403 1.3e-187 659.8 397 83.1
THA.LOC104799439 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 2.9e-163 578.9 395 72.2
THA.LOC104814881 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 5.3e-157 558.1 399 69.4
RcHm_v2.0_Chr5g0065861 Rosa chinensis HOM05D006754 ORTHO05D008403 1.6e-137 493.4 401 62.1
QL01p030969 Quercus lobata HOM05D006754 ORTHO05D008403 2.3e-136 489.6 401 61.8
Thecc.09G318400 Theobroma cacao HOM05D006754 ORTHO05D008403 3.3e-135 485.7 402 62.9
FAN11G1342 Fragaria x ananassa HOM05D006754 ORTHO05D008403 5.3e-133 478.4 387 61.5
FvH4_3g36800 Fragaria vesca HOM05D006754 ORTHO05D008403 2.0e-132 476.5 386 61.4
Atru.chr3.3972 Acer truncatum HOM05D006754 ORTHO05D008403 7.7e-132 474.6 397 61.5
MD03G1088200 Malus domestica HOM05D006754 ORTHO05D008403 2.9e-131 472.6 404 59.9
Gorai.009G097800 Gossypium raimondii HOM05D006754 ORTHO05D008403 8.5e-131 471.1 398 61.1
Gohir.A05G094100 Gossypium hirsutum HOM05D006754 ORTHO05D008403 2.5e-130 469.5 398 61.1
CSS0026926 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 9.4e-130 467.6 397 58.7
Ca_24122_v3 Cicer arietinum L. HOM05D006754 ORTHO05D008403 9.4e-130 467.6 411 58.9
FAN25G2379 Fragaria x ananassa HOM05D006754 ORTHO05D008403 9.4e-130 467.6 385 61.0
CSS0030688 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 1.6e-129 466.8 397 58.7
COL.COLO4_18549 Corchorus olitorius HOM05D006754 ORTHO05D008403 2.7e-129 466.1 402 60.0
FAN16G0425 Fragaria x ananassa HOM05D006754 ORTHO05D008403 6.1e-129 464.9 398 59.8
Potri.009G033700 Populus trichocarpa HOM05D006754 ORTHO05D008403 8.0e-129 464.5 409 58.4
Ciclev10030407m.g Citrus clementina HOM05D006754 ORTHO05D008403 5.2e-128 461.8 402 59.5
Psat4g178480 Pisum sativum HOM05D006754 ORTHO05D008403 5.2e-128 461.8 350 64.6
Haze_24130 Corylus avellana HOM05D006754 ORTHO05D008403 6.7e-128 461.5 402 61.2
CiPaw.14G067200 Carya illinoinensis HOM05D006754 ORTHO05D008403 1.5e-127 460.3 402 60.0
TWI79G1092 Tripterygium wilfordii HOM05D006754 ORTHO05D008403 1.5e-127 460.3 404 57.7
Glyma.08G227600 Glycine max HOM05D006754 ORTHO05D008403 2.2e-126 456.4 404 60.6
Glyma.15G221700 Glycine max HOM05D006754 ORTHO05D008403 2.8e-126 456.1 404 59.9
Hma1.2p1_0615F.1_g189790 Hydrangea macrophylla HOM05D006754 ORTHO05D008403 3.7e-126 455.7 407 59.5
Eucgr.B02322 Eucalyptus grandis HOM05D006754 ORTHO05D008403 6.3e-126 454.9 399 59.1
Cpa.g.sc81.116 Carica papaya HOM05D006754 ORTHO05D008403 1.4e-125 453.8 397 56.7
Potri.001G242400 Populus trichocarpa HOM05D006754 ORTHO05D008403 9.1e-125 451.1 406 57.6
Medtr8g044030 Medicago truncatula HOM05D006754 ORTHO05D008403 1.6e-124 450.3 343 63.6
CsaV3_1G034490 Cucumis sativus L. HOM05D006754 ORTHO05D008403 5.9e-124 448.4 402 58.7
VMungo1127G1194 Vigna mungo HOM05D006754 ORTHO05D008403 5.0e-123 445.3 402 59.0
Sabra16G0147200 Salix brachista HOM05D006754 ORTHO05D008403 3.2e-122 442.6 407 57.0
Lj3g0006516 Lotus japonicus HOM05D006754 ORTHO05D008403 7.2e-122 441.4 350 62.9
DCAR_005953 Daucus carota HOM05D006754 ORTHO05D008403 2.1e-121 439.9 411 56.4
PGR102G0280 Punica granatum HOM05D006754 ORTHO05D008403 1.4e-120 437.2 383 58.0
Lj2P1066T40 Lonicera japonica HOM05D006754 ORTHO05D008403 1.8e-120 436.8 403 54.3
Prupe.6G072500 Prunus persica HOM05D006754 ORTHO05D008403 3.0e-120 436.0 386 57.5
Phvul.011G187300 Phaseolus vulgaris HOM05D006754 ORTHO05D008403 2.6e-119 433.0 404 58.4
Sc12g0001320 Simmondsia chinensis HOM05D006754 ORTHO05D008403 3.4e-119 432.6 398 56.0
CANSAT56G3630 Cannabis sativa HOM05D006754 ORTHO05D008403 9.7e-119 431.0 396 58.8
ClCG03G001330 Citrullus lanatus HOM05D006754 ORTHO05D008403 9.7e-119 431.0 374 59.9
Migut.F00608 Erythranthe guttata HOM05D006754 ORTHO05D008403 3.1e-117 426.0 407 55.3
arahy.Tifrunner.gnm1.ann1.826T7K Arachis hypogaea HOM05D006754 ORTHO05D008403 2.0e-116 423.3 386 58.5
Aqoxy2G02260 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 4.5e-116 422.2 386 58.5
Oeu026710.1 Olea europaea HOM05D006754 ORTHO05D008403 5.9e-116 421.8 322 64.9
PGSC0003DMG400030707 Solanum tuberosum HOM05D006754 ORTHO05D008403 5.9e-116 421.8 410 54.6
Sopen07g003690 Solanum pennellii HOM05D006754 ORTHO05D008403 7.7e-116 421.4 410 54.6
Manes.01G171100 Manihot esculenta HOM05D006754 ORTHO05D008403 1.0e-115 421.0 388 57.2
Sed0002230 Sechium edule HOM05D006754 ORTHO05D008403 1.0e-115 421.0 378 58.5
Ah.15g097770 Amaranthus hybridus HOM05D006754 ORTHO05D008403 2.9e-115 419.5 381 58.3
FAN21G1313 Fragaria x ananassa HOM05D006754 ORTHO05D008403 2.5e-114 416.4 367 58.9
Cc01_g13150 Coffea canephora HOM05D006754 ORTHO05D008403 5.5e-114 415.2 402 55.0
Solyc07g007700.3 Solanum lycopersicum HOM05D006754 ORTHO05D008403 5.5e-114 415.2 359 57.7
PSO339G3555 Papaver somniferum HOM05D006754 ORTHO05D008403 9.4e-114 414.5 389 56.0
PSO063G1099 Papaver somniferum HOM05D006754 ORTHO05D008403 1.6e-113 413.7 387 56.1
MSTRG.21206 Avicennia marina HOM05D006754 ORTHO05D008403 4.7e-113 412.1 314 65.3
Nn8g38772 Nelumbo nucifera HOM05D006754 ORTHO05D008403 1.8e-112 410.2 406 53.7
HanXRQChr05g0135011 Helianthus annuus HOM05D006754 ORTHO05D008403 2.3e-112 409.8 376 56.9
EL10Ac7g16047 Beta vulgaris HOM05D006754 ORTHO05D008403 2.0e-111 406.8 380 53.7
Nitab4.5_0007132g0020 Nicotiana tabacum HOM05D006754 ORTHO05D008403 3.4e-111 406.0 288 65.6
CAN.G969.5 Capsicum annuum HOM05D006754 ORTHO05D008403 9.8e-111 404.4 382 55.0
Lsat_1_v5_gn_8_73421 Lactuca sativa HOM05D006754 ORTHO05D008403 2.8e-110 402.9 378 55.3
AUR62001757 Chenopodium quinoa HOM05D006754 ORTHO05D008403 6.3e-110 401.7 378 55.8
Nitab4.5_0000272g0070 Nicotiana tabacum HOM05D006754 ORTHO05D008403 8.3e-110 401.4 274 68.2
SalBow7G4834 Salvia bowleyana HOM05D006754 ORTHO05D008403 8.3e-110 401.4 403 55.3
Duzib168G0850 Durio zibethinus HOM05D006754 ORTHO05D008403 1.1e-109 401.0 245 74.7
SalBow7G2225 Salvia bowleyana HOM05D006754 ORTHO05D008403 2.0e-108 396.7 403 55.1
AUR62009543 Chenopodium quinoa HOM05D006754 ORTHO05D008403 2.5e-106 389.8 378 54.8
CDE04G0725 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 2.3e-104 383.3 323 57.0
MBI14_g12133_MAGBIO Magnolia biondii HOM05D006754 ORTHO05D008403 1.5e-103 380.6 292 65.1
unitig_37.g12673 Utricularia gibba HOM05D006754 ORTHO05D008403 1.7e-102 377.1 303 61.7
Dinv22095 Davidia involucrata HOM05D006754 ORTHO05D008403 4.9e-102 375.6 250 70.0
ATR0752G045 Amborella trichopoda HOM05D006754 ORTHO05D008403 9.2e-101 371.3 291 61.5
CDE07G0060 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 9.2e-101 371.3 316 55.4
SGA_v2.0_scaffold51G18718 Striga asiatica HOM05D006754 ORTHO05D008403 1.0e-99 367.9 411 49.4
Sed0016816 Sechium edule HOM05D006754 ORTHO05D008403 3.3e-98 362.8 381 50.4
Peaxi162Scf00122g00144 Petunia axillaris HOM05D006754 ORTHO05D008403 2.8e-97 359.8 398 49.0
Gohir.D05G094600 Gossypium hirsutum HOM05D006754 ORTHO05D008403 3.6e-97 359.4 325 56.9
Lalb_Chr01g0007611 Lupinus albus HOM05D006754 ORTHO05D008403 7.3e-90 335.1 325 55.4
Dinv09390 Davidia involucrata HOM05D006754 ORTHO05D008403 9.5e-90 334.7 215 72.6
Oeu004165.1 Olea europaea HOM05D006754 ORTHO05D008403 1.7e-86 323.9 301 57.1
TPR.G35751 Trifolium pratense HOM05D006754 ORTHO05D008403 3.8e-70 269.6 325 46.5
GSVIVG01024926001 Vitis vinifera HOM05D006754 ORTHO05D008403 1.2e-63 248.1 402 39.3
ECA236G3563 Erigeron canadensis HOM05D006754 ORTHO05D008403 3.5e-60 236.5 150 72.0
C03p13670 Brassica napus HOM05D006754 ORTHO05D008403 7.6e-55 218.8 164 68.9
BolC3t13816H Brassica oleracea HOM05D006754 ORTHO05D008403 7.6e-55 218.8 164 68.9
Pp3c1_41830 Physcomitrium patens HOM05D006754 ORTHO05D008403 4.6e-52 209.5 311 37.0
Mapoly0044s0017 Marchantia polymorpha HOM05D006754 ORTHO05D008403 2.8e-49 200.3 286 39.2
BcaB05g22514 Brassica carinata HOM05D006754 ORTHO05D008403 1.1e-48 198.4 157 65.6
AagrBONN_evm.TU.Sc2ySwM_368.2585 Anthoceros agrestis HOM05D006754 ORTHO05D008403 2.1e-44 184.1 282 37.6
HPP92_027965 Vanilla planifolia HOM05D006754 ORTHO05D008403 1.9e-42 177.6 168 51.8
SMO356G0015 Selaginella moellendorffii HOM05D006754 ORTHO05D008403 1.1e-40 171.8 272 36.0
Nn4g26458 Nelumbo nucifera HOM05D006754 ORTHO05D008403 2.2e-38 164.1 119 64.7
MD11G1097300 Malus domestica HOM05D006754 ORTHO05D008403 3.8e-38 163.3 139 59.0
Aqoxy2G02265 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 5.1e-35 152.9 199 48.7
CBR_g46210 Chara braunii HOM05D006754 ORTHO05D008403 3.4e-31 140.2 246 35.8
Dinv06263 Davidia involucrata HOM05D006754 ORTHO05D008403 2.9e-30 137.1 96 71.9
HPP92_001678 Vanilla planifolia HOM05D006754 ORTHO05D008403 3.9e-19 100.1 153 39.2
BcaC03g14007 Brassica carinata HOM05D006754 ORTHO05D008403 1.8e-16 91.3 94 60.6
C02p12450 Brassica napus HOM05D006754 ORTHO05D008403 1.5e-15 88.2 92 59.8
SEGI_33641 Sequoiadendron giganteum HOM05D006754 ORTHO05D008403 4.0e-11 73.6 208 25.5
Cre01.g049750 Chlamydomonas reinhardtii HOM05D006754 ORTHO05D008403 6.3e-09 66.2 208 28.4


User provided reference genes

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