Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 3.2e-90 335.1 175 100.0
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 8.2e-78 293.9 177 89.3
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 5.5e-74 281.2 176 86.4
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 2.3e-72 275.8 177 87.0
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 1.1e-71 273.5 177 84.7
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 5.3e-69 264.6 174 83.3
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 7.2e-66 254.2 177 79.1
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 1.2e-65 253.4 179 81.6
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 3.1e-61 238.8 178 78.1
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 3.1e-61 238.8 178 78.1
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 3.1e-61 238.8 178 78.1
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 9.1e-61 237.3 178 77.5
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 3.5e-60 235.3 177 77.4
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 8.5e-59 230.7 180 75.6
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 2.7e-57 225.7 179 76.0
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 4.0e-56 221.9 179 75.4
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 6.8e-56 221.1 184 69.6
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 8.0e-49 197.6 167 71.9
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 6.8e-48 194.5 149 77.9
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 1.2e-47 193.7 176 66.5
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 7.5e-47 191.0 183 63.9
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 2.9e-43 179.1 150 74.7
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 1.5e-42 176.8 182 64.3
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 2.1e-41 172.9 177 63.3
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 1.4e-40 170.2 179 64.2
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 5.7e-39 164.9 207 52.7
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 5.7e-39 164.9 131 74.8
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 9.2e-37 157.5 188 54.8
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 2.9e-35 152.5 182 55.5
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 8.6e-35 151.0 183 54.1
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 1.1e-34 150.6 134 68.7
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.9e-34 149.8 179 53.6
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 2.5e-34 149.4 181 54.7
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 5.6e-34 148.3 187 54.5
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 5.6e-34 148.3 177 57.1
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 1.2e-33 147.1 219 50.2
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 1.6e-33 146.7 180 57.8
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.6e-33 146.7 187 53.5
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 2.1e-33 146.4 188 54.3
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 2.8e-33 146.0 187 50.3
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 2.8e-33 146.0 190 51.6
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.0e-32 144.1 181 50.8
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 1.0e-32 144.1 187 52.4
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 1.0e-32 144.1 187 52.4
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 1.0e-32 144.1 187 52.4
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 2.3e-32 142.9 186 51.1
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.3e-32 142.9 179 55.3
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 2.3e-32 142.9 180 50.0
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 3.1e-32 142.5 188 50.5
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 5.2e-32 141.7 184 52.7
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 8.9e-32 141.0 185 49.7
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 8.9e-32 141.0 180 51.1
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 1.2e-31 140.6 186 52.2
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.2e-31 140.6 189 51.3
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 2.0e-31 139.8 186 52.2
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 2.6e-31 139.4 176 52.3
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 3.4e-31 139.0 177 50.8
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 4.4e-31 138.7 181 49.7
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 5.8e-31 138.3 179 49.7
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 5.8e-31 138.3 179 50.3
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 5.8e-31 138.3 186 51.6
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 7.5e-31 137.9 186 52.2
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 7.5e-31 137.9 181 51.9
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.3e-30 137.1 175 54.3
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 1.3e-30 137.1 190 50.0
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.3e-30 137.1 176 52.3
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 1.3e-30 137.1 186 51.1
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.3e-30 137.1 190 53.2
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.3e-30 137.1 187 51.3
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 2.2e-30 136.3 183 50.3
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 2.2e-30 136.3 191 50.3
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 2.9e-30 136.0 190 48.9
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 2.9e-30 136.0 186 50.0
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 4.9e-30 135.2 184 48.4
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 4.9e-30 135.2 177 49.7
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 8.3e-30 134.4 182 51.1
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 1.1e-29 134.0 187 51.3
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 2.4e-29 132.9 175 51.4
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 2.4e-29 132.9 182 48.4
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 2.4e-29 132.9 182 45.6
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 5.4e-29 131.7 187 46.5
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 9.2e-29 131.0 182 46.7
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 9.2e-29 131.0 182 46.2
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 9.2e-29 131.0 181 49.7
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 1.6e-28 130.2 182 47.8
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.6e-28 130.2 175 53.1
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.6e-28 130.2 175 53.1
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 2.0e-28 129.8 175 48.0
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 2.7e-28 129.4 188 47.9
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 3.5e-28 129.0 182 47.3
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 3.5e-28 129.0 179 53.1
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.5e-28 129.0 187 48.7
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 1.7e-27 126.7 177 45.8
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 5.0e-27 125.2 182 47.8
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 8.6e-27 124.4 177 46.3
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 3.3e-26 122.5 184 45.1
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 4.3e-26 122.1 184 46.7
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 5.6e-26 121.7 183 45.4
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.2e-25 120.6 192 47.4
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.2e-25 120.6 199 46.2
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 1.2e-25 120.6 185 43.8
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 3.6e-25 119.0 181 46.4
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 3.6e-25 119.0 181 47.0
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 8.1e-25 117.9 181 45.3
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.8e-24 114.8 160 53.1
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 6.8e-24 114.8 187 44.9
BcaB01g04584 Brassica carinata HOM05D004998 ORTHO05D006104 1.5e-23 113.6 97 73.2
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.5e-23 113.6 205 45.4
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 2.6e-23 112.8 109 59.6
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 2.6e-23 112.8 186 45.2
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 3.4e-23 112.5 189 45.5
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 7.5e-23 111.3 185 44.9
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 2.9e-22 109.4 182 45.1
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.7e-22 109.0 166 50.6
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 5.4e-21 105.1 195 42.1
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 5.4e-21 105.1 99 61.6
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 9.2e-21 104.4 166 49.4
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 1.2e-20 104.0 186 41.9
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 6.0e-20 101.7 181 40.9
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.3e-19 100.5 172 40.1
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 1.1e-18 97.4 196 39.8
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 1.9e-18 96.7 227 37.4
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 1.6e-17 93.6 75 65.3
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 6.2e-17 91.7 190 41.6
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 1.1e-16 90.9 184 42.4
C01p49830 Brassica napus HOM05D004998 ORTHO05D006104 3.1e-16 89.4 75 69.3
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 4.0e-16 89.0 188 41.5
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 9.9e-15 84.3 151 40.4
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 9.9e-15 84.3 187 37.4
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 2.9e-14 82.8 124 43.5
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 2.9e-14 82.8 82 54.9
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 7.3e-10 68.2 172 36.6
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 9.6e-10 67.8 186 33.9
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.2e-09 67.4 186 33.9
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.6e-09 67.0 118 40.7
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 1.1e-08 64.3 100 43.0
A01p36350 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-07 60.8 46 73.9
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 7.6e-07 58.2 140 37.9
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 2.2e-06 56.6 192 27.6
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.9e-06 55.5 186 32.3
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 6.4e-06 55.1 136 36.0


User provided reference genes

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