Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 7.6e-68 260.4 132 100.0
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.5e-60 236.1 132 90.2
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 6.4e-59 230.7 132 87.1
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.9e-58 229.2 133 89.5
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 3.2e-58 228.4 132 87.9
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 4.2e-58 228.0 132 89.4
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.2e-57 226.5 132 87.9
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 4.3e-55 218.0 132 82.6
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 4.8e-54 214.5 133 81.2
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 8.1e-54 213.8 132 82.6
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 1.1e-53 213.4 132 79.5
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 1.4e-53 213.0 132 81.8
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 1.4e-53 213.0 132 80.3
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 1.4e-53 213.0 132 80.3
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 1.4e-53 213.0 132 80.3
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 9.0e-53 210.3 132 77.3
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 1.2e-52 209.9 132 79.5
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 1.2e-52 209.9 132 79.5
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 1.2e-52 209.9 132 78.0
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.5e-52 209.5 132 79.5
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.5e-52 209.5 132 79.5
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 1.5e-52 209.5 133 79.7
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.0e-52 209.1 132 81.1
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 3.4e-52 208.4 132 77.3
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 4.5e-52 208.0 132 79.5
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.5e-52 208.0 132 78.8
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 4.5e-52 208.0 132 77.3
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 7.6e-52 207.2 132 79.5
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 7.6e-52 207.2 132 77.3
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.6e-52 207.2 132 78.0
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 9.9e-52 206.8 132 78.8
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 9.9e-52 206.8 134 76.1
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 9.9e-52 206.8 132 78.8
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 1.3e-51 206.5 132 78.0
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 1.7e-51 206.1 132 77.3
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.9e-51 205.3 134 77.6
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 3.8e-51 204.9 132 77.3
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 3.8e-51 204.9 132 77.3
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 4.9e-51 204.5 132 76.5
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 4.9e-51 204.5 132 76.5
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 4.9e-51 204.5 132 77.3
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 6.4e-51 204.1 132 76.5
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 6.4e-51 204.1 132 78.0
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 8.4e-51 203.8 131 76.3
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 8.4e-51 203.8 132 77.3
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 75.9
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.4e-50 203.0 132 76.5
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 1.4e-50 203.0 134 76.9
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.4e-50 203.0 132 78.0
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 1.9e-50 202.6 132 76.5
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 2.4e-50 202.2 132 76.5
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 2.4e-50 202.2 132 77.3
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.2e-50 201.8 132 78.0
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 3.2e-50 201.8 132 75.8
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.2e-50 201.8 132 72.7
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 5.5e-50 201.1 133 75.2
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 5.5e-50 201.1 134 75.4
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 5.5e-50 201.1 133 75.9
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 5.5e-50 201.1 132 77.3
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 5.5e-50 201.1 132 76.5
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 1.2e-49 199.9 132 77.3
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 2.1e-49 199.1 133 73.7
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 2.1e-49 199.1 132 76.5
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 2.1e-49 199.1 132 77.3
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.1e-49 199.1 133 74.4
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.1e-49 199.1 132 75.0
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 2.7e-49 198.7 133 76.7
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 2.7e-49 198.7 133 73.7
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 2.7e-49 198.7 132 77.3
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 3.5e-49 198.4 133 73.7
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 3.5e-49 198.4 125 77.6
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 3.5e-49 198.4 132 74.2
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 3.5e-49 198.4 132 74.2
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 4.6e-49 198.0 133 72.9
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 4.6e-49 198.0 132 72.7
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.6e-49 198.0 129 76.7
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.6e-49 198.0 136 72.8
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 4.6e-49 198.0 130 77.7
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 6.0e-49 197.6 132 75.0
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 6.0e-49 197.6 129 76.7
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 6.0e-49 197.6 129 76.7
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 6.0e-49 197.6 132 77.3
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 7.9e-49 197.2 132 74.2
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 1.3e-48 196.4 132 74.2
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 1.3e-48 196.4 132 73.5
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.8e-48 196.1 131 74.0
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.8e-48 196.1 129 75.2
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 2.3e-48 195.7 133 72.2
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 2.3e-48 195.7 133 71.4
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 2.3e-48 195.7 133 71.4
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 2.3e-48 195.7 132 75.0
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 3.0e-48 195.3 133 71.4
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 3.9e-48 194.9 134 71.6
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 5.1e-48 194.5 132 73.5
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 5.1e-48 194.5 128 76.6
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 5.1e-48 194.5 133 74.4
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 6.7e-48 194.1 132 75.8
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 8.7e-48 193.7 133 71.4
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.1e-47 193.4 133 71.4
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.5e-47 193.0 132 71.2
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 1.5e-47 193.0 117 78.6
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 1.9e-47 192.6 132 73.5
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 2.5e-47 192.2 132 71.2
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 3.3e-47 191.8 128 74.2
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 3.3e-47 191.8 132 71.2
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 4.3e-47 191.4 134 69.4
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 4.3e-47 191.4 132 72.0
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 5.6e-47 191.0 134 69.4
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 5.6e-47 191.0 134 69.4
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 5.6e-47 191.0 134 69.4
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.6e-47 191.0 132 75.0
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 5.6e-47 191.0 132 69.7
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 7.4e-47 190.7 134 70.1
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 7.4e-47 190.7 134 68.7
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 9.6e-47 190.3 132 68.2
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 9.6e-47 190.3 132 72.7
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 1.3e-46 189.9 132 70.5
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 1.6e-46 189.5 132 70.5
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 2.1e-46 189.1 132 73.5
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 2.8e-46 188.7 112 78.6
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 3.7e-46 188.3 134 72.4
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 3.7e-46 188.3 132 72.0
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 8.2e-46 187.2 119 77.3
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.1e-45 186.8 132 72.0
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 1.4e-45 186.4 132 72.0
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 1.4e-45 186.4 147 68.7
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 1.8e-45 186.0 125 72.8
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 2.4e-45 185.7 124 72.6
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 5.3e-45 184.5 124 74.2
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.5e-44 183.0 120 75.0
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 2.6e-44 182.2 131 69.5
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 2.6e-44 182.2 132 65.2
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 4.5e-44 181.4 125 69.6
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 7.6e-44 180.6 129 71.3
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 1.7e-43 179.5 104 79.8
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 1.4e-42 176.4 125 72.0
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.4e-42 176.4 128 68.0
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 1.9e-42 176.0 124 71.0
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 5.5e-42 174.5 122 70.5
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 7.1e-42 174.1 121 71.1
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 1.6e-41 172.9 140 67.1
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 3.5e-41 171.8 132 63.6
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 1.8e-40 169.5 131 67.2
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 3.0e-40 168.7 117 65.8
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 1.6e-38 162.9 141 61.0
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 2.4e-37 159.1 132 57.6
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 5.3e-37 157.9 91 81.3
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.2e-36 156.8 113 68.1
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 1.1e-34 150.2 113 65.5
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 2.2e-30 136.0 112 58.0
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.0e-27 127.1 85 77.6
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 2.2e-27 125.9 78 75.6
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 6.7e-24 114.4 78 69.2
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.3e-22 110.2 77 67.5
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 4.1e-21 105.1 76 67.1
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 6.9e-21 104.4 73 68.5
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 8.5e-19 97.4 60 85.0
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 8.5e-19 97.4 77 61.0
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 7.2e-18 94.4 56 82.1
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 2.7e-17 92.4 75 58.7
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 1.6e-12 76.6 50 72.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 1.1e-10 70.5 95 36.8
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 4.7e-09 65.1 45 62.2
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 3.0e-08 62.4 38 71.1


User provided reference genes

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