Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR285120 Cardamine hirsuta HOM05D007213 ORTHO05D009165 0.0e+00 1170.6 717 100.0
AL6G36700 Arabidopsis lyrata HOM05D007213 ORTHO05D009165 2.7e-260 902.1 730 80.7
AT5G25070 Arabidopsis thaliana HOM05D007213 ORTHO05D009165 2.0e-255 885.9 744 79.8
Thhalv10016307m.g Eutrema salsugineum HOM05D007213 ORTHO05D009165 5.3e-248 861.3 748 77.3
BcaB02g09137 Brassica carinata HOM05D007213 ORTHO05D009165 7.4e-242 840.9 746 75.2
BraA05t19677Z Brassica rapa HOM05D007213 ORTHO05D009165 3.1e-240 835.5 741 71.9
A05p07120 Brassica napus HOM05D007213 ORTHO05D009165 2.9e-238 828.9 742 69.5
Sp4g21590 Schrenkiella parvula HOM05D007213 ORTHO05D009165 7.7e-231 804.3 744 69.9
SpUn0018_0080 Schrenkiella parvula HOM05D007213 ORTHO05D009165 7.7e-231 804.3 744 69.9
BolC4t22448H Brassica oleracea HOM05D007213 ORTHO05D009165 1.3e-230 803.5 738 71.7
C04p08490 Brassica napus HOM05D007213 ORTHO05D009165 5.3e-224 781.6 738 69.0
THA.LOC104801651 Tarenaya hassleriana HOM05D007213 ORTHO05D009165 4.1e-200 702.2 751 65.6
Carub.0006s2290 Capsella rubella HOM05D007213 ORTHO05D009165 1.1e-189 667.5 735 66.9
Aa31LG9G12510 Aethionema arabicum HOM05D007213 ORTHO05D009165 5.6e-181 638.6 755 62.1
BcaC02g12047 Brassica carinata HOM05D007213 ORTHO05D009165 2.0e-154 550.4 448 73.7
GSVIVG01013472001 Vitis vinifera HOM05D007213 ORTHO05D009165 4.3e-133 479.6 675 46.5
Cpa.g.sc36.83 Carica papaya HOM05D007213 ORTHO05D009165 8.1e-132 475.3 730 48.6
Cfa014177 Carpinus fangiana HOM05D007213 ORTHO05D009165 4.5e-130 469.5 775 45.7
FAN18G3120 Fragaria x ananassa HOM05D007213 ORTHO05D009165 1.9e-125 454.1 725 49.1
QL02p016552 Quercus lobata HOM05D007213 ORTHO05D009165 1.9e-125 454.1 785 45.9
FAN04G0748 Fragaria x ananassa HOM05D007213 ORTHO05D009165 3.3e-125 453.4 731 47.3
Dinv35497 Davidia involucrata HOM05D007213 ORTHO05D009165 5.3e-123 446.0 774 41.2
Ciclev10000432m.g Citrus clementina HOM05D007213 ORTHO05D009165 1.2e-122 444.9 726 46.1
CSS0032989 Camellia sinensis var. sinensis HOM05D007213 ORTHO05D009165 2.3e-118 430.6 546 49.6
FAN08G1354 Fragaria x ananassa HOM05D007213 ORTHO05D009165 1.5e-117 427.9 715 46.7
Ca_24332_v3 Cicer arietinum L. HOM05D007213 ORTHO05D009165 5.7e-117 426.0 724 42.1
Thecc.07G095200 Theobroma cacao HOM05D007213 ORTHO05D009165 9.7e-117 425.2 737 44.1
Actinidia15534 Actinidia chinensis HOM05D007213 ORTHO05D009165 2.8e-116 423.7 545 45.7
Haze_22902 Corylus avellana HOM05D007213 ORTHO05D009165 3.1e-115 420.2 782 43.9
MD04G1004600 Malus domestica HOM05D007213 ORTHO05D009165 3.1e-115 420.2 757 47.6
Gohir.A04G034000 Gossypium hirsutum HOM05D007213 ORTHO05D009165 9.0e-115 418.7 760 43.3
ECA233G0001 Erigeron canadensis HOM05D007213 ORTHO05D009165 1.5e-114 417.9 754 38.9
Gorai.009G379100 Gossypium raimondii HOM05D007213 ORTHO05D009165 3.4e-114 416.8 775 44.0
Dinv05524 Davidia involucrata HOM05D007213 ORTHO05D009165 5.9e-114 416.0 842 38.2
Eucgr.F03636 Eucalyptus grandis HOM05D007213 ORTHO05D009165 5.9e-114 416.0 824 40.7
Gohir.D05G349200 Gossypium hirsutum HOM05D007213 ORTHO05D009165 5.9e-114 416.0 775 43.4
Lj1g0003700 Lotus japonicus HOM05D007213 ORTHO05D009165 5.9e-114 416.0 736 41.2
Rhsim06G0000200 Rhododendron simsii HOM05D007213 ORTHO05D009165 3.8e-113 413.3 809 37.3
Glyma.01G245400 Glycine max HOM05D007213 ORTHO05D009165 2.5e-112 410.6 752 41.4
FvH4_5g26850 Fragaria vesca HOM05D007213 ORTHO05D009165 2.1e-111 407.5 725 46.3
Aqoxy5G00918 Aquilegia oxysepala HOM05D007213 ORTHO05D009165 2.7e-111 407.1 798 38.7
MBI01_g32846_MAGBIO Magnolia biondii HOM05D007213 ORTHO05D009165 3.6e-111 406.8 546 46.3
FAN13G0578 Fragaria x ananassa HOM05D007213 ORTHO05D009165 4.6e-111 406.4 729 46.2
Nn5g31088 Nelumbo nucifera HOM05D007213 ORTHO05D009165 4.6e-111 406.4 818 37.8
Potri.002G000800 Populus trichocarpa HOM05D007213 ORTHO05D009165 1.5e-109 401.4 740 40.4
PGSC0003DMG400025663 Solanum tuberosum HOM05D007213 ORTHO05D009165 2.5e-109 400.6 774 39.0
Sed0002482 Sechium edule HOM05D007213 ORTHO05D009165 2.8e-108 397.1 712 39.0
vmacro21731 Vaccinium macrocarpon HOM05D007213 ORTHO05D009165 3.7e-108 396.7 800 37.2
HanXRQChr07g0204351 Helianthus annuus HOM05D007213 ORTHO05D009165 4.8e-108 396.4 805 37.8
Sabra02G0000800 Salix brachista HOM05D007213 ORTHO05D009165 4.8e-108 396.4 751 41.3
PSO017G1686 Papaver somniferum HOM05D007213 ORTHO05D009165 9.1e-107 392.1 783 37.9
Medtr5g004630 Medicago truncatula HOM05D007213 ORTHO05D009165 5.9e-106 389.4 727 40.0
PSO170G0484 Papaver somniferum HOM05D007213 ORTHO05D009165 7.7e-106 389.0 784 37.5
CAN.G1330.34 Capsicum annuum HOM05D007213 ORTHO05D009165 1.2e-103 381.7 719 39.6
Actinidia17102 Actinidia chinensis HOM05D007213 ORTHO05D009165 3.6e-103 380.2 807 35.4
TPR.G21615 Trifolium pratense HOM05D007213 ORTHO05D009165 4.7e-103 379.8 746 39.1
Atru.chr13.12 Acer truncatum HOM05D007213 ORTHO05D009165 7.9e-103 379.0 778 39.5
Lsat_1_v5_gn_8_25680 Lactuca sativa HOM05D007213 ORTHO05D009165 3.0e-102 377.1 830 38.2
AUR62036517 Chenopodium quinoa HOM05D007213 ORTHO05D009165 1.1e-101 375.2 802 36.3
AUR62042263 Chenopodium quinoa HOM05D007213 ORTHO05D009165 1.5e-101 374.8 809 36.1
EL10Ac5g11683 Beta vulgaris HOM05D007213 ORTHO05D009165 7.4e-101 372.5 801 36.0
COL.COLO4_36704 Corchorus olitorius HOM05D007213 ORTHO05D009165 7.0e-99 365.9 544 45.2
TWI12G1047 Tripterygium wilfordii HOM05D007213 ORTHO05D009165 7.7e-98 362.5 739 41.9
CANSAT54G2751 Cannabis sativa HOM05D007213 ORTHO05D009165 1.6e-95 354.8 722 38.1
Peaxi162Scf00385g01231 Petunia axillaris HOM05D007213 ORTHO05D009165 1.6e-95 354.8 724 38.1
Prupe.1G004400 Prunus persica HOM05D007213 ORTHO05D009165 3.3e-93 347.1 739 42.2
CDE06G2408 Ceratophyllum demersum HOM05D007213 ORTHO05D009165 5.7e-93 346.3 485 44.7
RcHm_v2.0_Chr7g0217751 Rosa chinensis HOM05D007213 ORTHO05D009165 1.3e-92 345.1 738 44.4
Phvul.002G054800 Phaseolus vulgaris HOM05D007213 ORTHO05D009165 7.7e-90 335.9 542 41.3
DCAR_013347 Daucus carota HOM05D007213 ORTHO05D009165 1.3e-89 335.1 531 41.4
Cc10_g00050 Coffea canephora HOM05D007213 ORTHO05D009165 1.5e-88 331.6 778 34.6
Manes.05G113600 Manihot esculenta HOM05D007213 ORTHO05D009165 4.2e-88 330.1 766 36.3
Psat4g219720 Pisum sativum HOM05D007213 ORTHO05D009165 2.7e-87 327.4 394 49.0
ATR0605G010 Amborella trichopoda HOM05D007213 ORTHO05D009165 1.2e-85 322.0 495 41.6
CiPaw.07G129300 Carya illinoinensis HOM05D007213 ORTHO05D009165 1.7e-84 318.2 567 40.6
Nitab4.5_0003364g0010 Nicotiana tabacum HOM05D007213 ORTHO05D009165 5.2e-78 296.6 562 38.6
VMungo1215G3163 Vigna mungo HOM05D007213 ORTHO05D009165 5.7e-77 293.1 544 40.4
Eucgr.B03972 Eucalyptus grandis HOM05D007213 ORTHO05D009165 1.1e-75 288.9 421 44.7
Eucgr.B01563 Eucalyptus grandis HOM05D007213 ORTHO05D009165 3.1e-75 287.3 401 45.1
Zm00001eb035390 Zea mays HOM05D007213 ORTHO05D009165 1.6e-66 258.5 769 32.9
PGR031G0765 Punica granatum HOM05D007213 ORTHO05D009165 5.9e-66 256.5 780 31.5
Sc07g0007610 Simmondsia chinensis HOM05D007213 ORTHO05D009165 1.7e-57 228.4 604 33.8
Zm00001eb174530 Zea mays HOM05D007213 ORTHO05D009165 1.5e-53 215.3 733 29.9
Mapoly0055s0021 Marchantia polymorpha HOM05D007213 ORTHO05D009165 2.0e-53 214.9 505 32.7
TAR381G0309 Trochodendron aralioides HOM05D007213 ORTHO05D009165 4.6e-50 203.8 480 35.6
HPP92_026844 Vanilla planifolia HOM05D007213 ORTHO05D009165 1.1e-48 199.1 389 37.0
Glyma.03G099100 Glycine max HOM05D007213 ORTHO05D009165 1.1e-43 182.6 303 41.9
TAR381G1607 Trochodendron aralioides HOM05D007213 ORTHO05D009165 1.0e-41 176.0 265 44.9
SMO239G0074 Selaginella moellendorffii HOM05D007213 ORTHO05D009165 4.3e-40 170.6 543 31.3
AagrBONN_evm.TU.Sc2ySwM_344.2101 Anthoceros agrestis HOM05D007213 ORTHO05D009165 5.8e-37 160.2 505 28.5
CARHR259620 Cardamine hirsuta HOM05D001955 ORTHO05D001917 6.2e-31 140.2 132 63.6
Actinidia08359 Actinidia chinensis HOM05D007213 ORTHO05D009165 5.1e-25 120.6 338 31.7
Hma1.2p1_0810F.1_g221910 Hydrangea macrophylla HOM05D007213 ORTHO05D009165 1.3e-20 105.9 184 39.1
HPP92_026843 Vanilla planifolia HOM05D007213 ORTHO05D009165 3.2e-19 101.3 366 30.1
SEGI_34531 Sequoiadendron giganteum HOM05D007213 ORTHO05D009165 5.5e-19 100.5 750 25.7
Actinidia37289 Actinidia chinensis HOM05D007213 ORTHO05D009165 3.1e-14 84.7 192 35.9
Lsat_1_v5_gn_4_123560 Lactuca sativa HOM05D007213 ORTHO05D009165 1.9e-11 75.5 80 55.0
Lsat_1_v5_gn_2_25501 Lactuca sativa HOM05D007213 ORTHO05D009165 7.1e-11 73.6 80 53.8
HPP92_019587 Vanilla planifolia HOM05D007213 ORTHO05D009165 9.3e-11 73.2 133 33.8
Lsat_1_v5_gn_4_171321 Lactuca sativa HOM05D007213 ORTHO05D009165 2.1e-10 72.0 80 51.2
CARHR119200 Cardamine hirsuta HOM05D007213 ORTHO05D009165 3.5e-10 71.2 70 58.6
Dinv19952 Davidia involucrata HOM05D007213 ORTHO05D009165 5.1e-09 67.4 70 51.4
Actinidia37290 Actinidia chinensis HOM05D007213 ORTHO05D009165 9.6e-08 63.2 83 43.4
Oeu000728.1 Olea europaea HOM05D007213 ORTHO05D009165 1.3e-07 62.8 98 46.9
ECA238G3550 Erigeron canadensis HOM05D008258 ORTHO05D003386 1.4e-06 59.3 116 36.2
Actinidia08360 Actinidia chinensis HOM05D007213 ORTHO05D009165 9.0e-06 56.6 49 61.2


User provided reference genes

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