Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 2.9e-254 881.3 429 100.0
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 5.4e-232 807.4 431 90.0
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 1.7e-230 802.4 431 91.0
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 2.6e-226 788.5 426 89.9
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 7.1e-224 780.4 421 89.8
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 5.6e-221 770.8 424 88.2
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 3.2e-216 755.0 423 87.2
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 3.2e-216 755.0 423 87.2
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 4.2e-216 754.6 444 82.7
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 4.2e-216 754.6 431 85.8
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 7.1e-216 753.8 431 85.8
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 1.2e-215 753.1 432 84.5
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 2.6e-186 655.6 421 75.3
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 6.5e-185 651.0 417 74.3
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.4e-184 649.8 424 73.3
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 7.2e-184 647.5 417 74.3
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 3.6e-183 645.2 418 73.4
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 3.9e-182 641.7 425 73.9
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 1.5e-181 639.8 430 71.2
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 4.8e-180 634.8 428 72.9
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 4.8e-180 634.8 417 72.9
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 4.8e-180 634.8 398 76.4
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 6.3e-180 634.4 419 72.6
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 1.8e-179 632.9 411 74.7
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.4e-179 632.5 420 72.9
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 6.9e-179 630.9 420 72.6
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 1.5e-178 629.8 332 90.7
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 2.0e-178 629.4 423 72.3
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.2e-177 625.9 427 71.4
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 5.0e-177 624.8 425 71.5
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.1e-176 623.6 423 71.6
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 9.4e-176 620.5 420 69.8
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.6e-175 619.8 424 71.0
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.1e-175 619.4 421 70.3
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 4.7e-175 618.2 436 69.5
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 6.1e-175 617.8 420 69.3
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.4e-174 616.7 420 69.3
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.4e-174 616.7 427 69.3
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.8e-174 616.3 414 71.7
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 2.0e-173 612.8 417 70.0
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 3.3e-173 612.1 416 70.7
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 3.3e-173 612.1 431 69.8
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 5.7e-173 611.3 413 70.2
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 9.7e-173 610.5 407 70.8
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 1.7e-172 609.8 417 69.3
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 4.8e-172 608.2 385 74.8
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.4e-171 606.7 417 68.6
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.8e-171 606.3 434 67.3
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 2.4e-171 605.9 406 70.9
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 2.4e-171 605.9 425 68.9
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.5e-170 603.2 428 68.9
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 3.5e-170 602.1 421 69.6
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 7.7e-170 600.9 388 72.9
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 1.7e-169 599.7 399 70.2
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.7e-169 599.7 423 67.8
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.2e-169 599.4 423 67.8
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 2.9e-169 599.0 414 68.8
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 1.1e-168 597.0 410 69.8
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.4e-168 596.7 398 71.1
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 5.5e-168 594.7 426 68.3
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 2.1e-167 592.8 388 71.1
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 3.6e-167 592.0 396 70.5
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 2.3e-166 589.3 410 69.8
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 3.0e-166 589.0 417 69.5
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 1.1e-165 587.0 410 69.0
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.5e-165 586.6 410 68.8
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 2.6e-165 585.9 398 70.1
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 9.7e-165 583.9 391 70.6
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.3e-164 583.6 434 66.6
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.3e-164 583.6 399 69.7
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.7e-164 583.2 387 71.1
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 6.3e-164 581.3 418 67.5
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 1.1e-163 580.5 432 65.5
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 1.4e-163 580.1 434 66.4
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 2.4e-163 579.3 425 66.6
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 4.5e-162 575.1 418 65.6
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 4.5e-162 575.1 417 68.1
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 7.7e-162 574.3 409 67.7
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 1.7e-161 573.2 417 67.9
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.7e-161 573.2 419 65.6
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 1.5e-160 570.1 424 65.8
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 2.5e-160 569.3 398 67.1
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.2e-159 567.0 410 65.6
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 2.1e-159 566.2 379 71.0
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 2.7e-159 565.8 426 65.7
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 8.0e-159 564.3 383 69.2
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 2.3e-158 562.8 464 60.8
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 1.7e-156 556.6 406 65.5
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 7.0e-155 551.2 411 64.5
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 7.7e-154 547.7 374 68.4
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.7e-153 546.6 398 63.8
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.5e-152 542.7 408 64.2
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 5.2e-150 535.0 338 74.0
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 4.8e-148 528.5 372 67.7
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 8.3e-148 527.7 375 67.2
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 1.6e-146 523.5 378 66.9
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 7.7e-146 521.2 397 62.7
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.5e-144 516.9 419 61.1
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.6e-141 506.1 422 60.4
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 3.1e-139 499.2 400 60.2
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 4.5e-138 495.4 380 62.1
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 6.1e-135 485.0 335 69.6
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 8.0e-135 484.6 411 58.4
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 7.0e-131 471.5 395 60.0
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 1.6e-130 470.3 393 58.5
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 2.0e-130 469.9 390 58.2
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 2.7e-130 469.5 452 54.9
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 4.6e-130 468.8 341 64.8
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 1.0e-129 467.6 414 56.5
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.1e-128 464.2 341 63.9
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.2e-127 460.7 341 63.6
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 8.9e-126 454.5 286 73.1
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 4.4e-125 452.2 319 68.0
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 5.6e-120 435.3 280 74.6
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 8.4e-108 394.8 260 73.1
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 2.4e-107 393.3 246 73.2
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 9.0e-102 374.8 301 56.8
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 2.9e-100 369.8 303 57.1
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 1.7e-97 360.5 407 46.4
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 3.9e-97 359.4 232 78.9
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 1.3e-89 334.3 175 89.1
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 1.8e-89 334.0 277 58.1
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.8e-87 326.6 204 72.1
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.5e-72 277.7 191 65.4
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 3.3e-72 276.6 318 42.8
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 6.9e-70 268.9 168 83.3
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 4.6e-66 256.1 221 57.9
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.0e-65 255.0 242 50.0
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 5.1e-65 252.7 195 59.5
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.3e-55 221.5 153 69.3
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.0e-41 175.3 115 65.2
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 5.4e-38 162.9 123 54.5
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 3.5e-37 160.2 134 51.5
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 2.5e-35 154.1 150 56.7
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 2.2e-31 141.0 156 51.9
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 8.3e-31 139.0 186 40.9
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 9.1e-30 135.6 114 57.0
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 1.2e-29 135.2 414 27.3
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 5.7e-24 116.3 296 30.4
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 4.6e-21 106.7 80 65.0
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 1.6e-18 98.2 63 66.7
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 7.0e-14 82.8 58 65.5
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 2.7e-13 80.9 51 68.6
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 5.6e-11 73.2 91 48.4
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 5.6e-11 73.2 91 48.4
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.5e-08 65.1 54 55.6


User provided reference genes

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