Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 2.1e-245 852.0 464 100.0
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 2.5e-214 748.8 476 83.2
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 2.5e-214 748.8 476 83.2
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 2.0e-211 739.2 468 82.3
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 2.8e-210 735.3 470 79.8
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 4.5e-208 728.0 473 79.9
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 1.5e-203 713.0 472 81.8
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 7.4e-203 710.7 464 76.7
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 1.1e-201 706.8 464 76.3
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 1.1e-201 706.8 464 76.3
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 4.5e-200 701.4 465 76.6
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 6.5e-199 697.6 465 76.1
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 8.0e-197 690.6 468 77.8
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 2.4e-169 599.4 425 70.6
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 5.4e-169 598.2 478 63.6
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 1.2e-149 533.9 476 56.3
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.7e-135 486.9 429 57.3
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 3.9e-135 485.7 434 57.4
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 2.1e-133 479.9 430 57.2
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 1.1e-132 477.6 425 58.1
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 5.3e-132 475.3 429 56.4
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 3.4e-131 472.6 438 56.2
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 9.9e-131 471.1 439 56.0
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 1.9e-129 466.8 431 55.5
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 2.4e-129 466.5 425 56.0
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.2e-128 464.2 422 55.7
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 2.1e-128 463.4 422 56.2
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 1.0e-127 461.1 430 55.6
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 5.1e-127 458.8 480 51.5
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 8.7e-127 458.0 426 56.1
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.5e-126 457.2 437 54.9
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 7.4e-126 454.9 433 54.5
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.8e-125 453.0 400 56.8
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 3.7e-125 452.6 474 51.1
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 4.8e-125 452.2 396 56.6
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 6.2e-125 451.8 428 56.1
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 6.2e-125 451.8 428 53.5
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 1.8e-124 450.3 420 55.2
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 2.4e-124 449.9 426 54.9
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 4.0e-124 449.1 428 52.3
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.2e-123 447.6 444 58.8
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.4e-123 446.0 447 58.8
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.3e-122 444.1 480 49.0
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 2.2e-122 443.4 425 55.1
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 6.5e-122 441.8 424 52.4
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 3.2e-121 439.5 390 56.4
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 7.1e-121 438.3 431 52.2
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 1.6e-120 437.2 433 52.7
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 7.9e-120 434.9 428 53.0
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 3.0e-119 433.0 417 54.0
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 3.0e-119 433.0 427 51.5
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 6.7e-119 431.8 433 50.8
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 6.7e-119 431.8 346 62.1
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 8.7e-119 431.4 432 51.2
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 1.1e-118 431.0 431 51.7
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 1.9e-118 430.3 422 52.6
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 1.9e-118 430.3 434 51.8
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 3.3e-118 429.5 433 50.1
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 7.4e-118 428.3 417 56.4
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 1.6e-117 427.2 431 49.0
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 2.8e-117 426.4 431 50.3
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 8.2e-117 424.9 431 49.0
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.1e-116 424.5 380 55.5
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 1.8e-116 423.7 434 51.4
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 1.8e-116 423.7 426 53.1
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 8.4e-114 414.8 429 51.5
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 1.4e-113 414.1 396 53.0
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 9.3e-113 411.4 408 51.2
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 1.2e-112 411.0 431 49.2
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 1.0e-111 407.9 432 50.2
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 1.5e-110 404.1 417 49.9
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 5.7e-110 402.1 415 51.3
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 7.4e-110 401.7 429 50.1
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 7.4e-110 401.7 459 47.9
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 1.3e-109 401.0 386 53.4
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 1.6e-109 400.6 354 57.1
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 4.8e-109 399.1 405 51.6
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 6.3e-109 398.7 355 55.8
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 6.3e-109 398.7 355 55.8
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 1.8e-108 397.1 428 47.9
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 5.3e-108 395.6 351 57.3
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 4.5e-107 392.5 351 56.7
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 7.2e-105 385.2 399 49.9
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 8.8e-103 378.3 348 54.9
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 2.8e-101 373.2 344 54.4
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 1.1e-100 371.3 426 47.2
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.8e-100 370.5 402 47.5
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 3.1e-100 369.8 343 54.5
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 5.0e-98 362.5 356 53.4
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 4.7e-96 355.9 330 53.9
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 7.7e-91 338.6 424 41.7
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 1.3e-90 337.8 343 52.5
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 4.5e-83 312.8 338 50.0
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 6.8e-79 298.9 262 59.5
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.3e-74 284.6 263 52.9
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 3.0e-63 246.9 421 35.9
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.2e-56 224.9 348 36.2
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 3.1e-55 220.3 180 58.9
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 1.7e-53 214.5 436 31.0
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 1.7e-53 214.5 356 35.1
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 7.0e-52 209.1 306 40.2
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 3.1e-47 193.7 193 49.2
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 3.5e-43 180.3 294 41.2
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 1.6e-40 171.4 361 32.7
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 3.4e-38 163.7 479 28.4
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 2.6e-30 137.5 196 40.3
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 1.6e-27 128.3 113 57.5
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 6.0e-27 126.3 113 57.5
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.7e-26 124.8 113 56.6
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 6.0e-11 73.2 101 43.6
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.8e-08 64.3 81 46.9
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 6.2e-08 63.2 72 43.1
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 2.4e-07 61.2 61 50.8
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.0e-07 60.5 87 39.1
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 9.0e-07 59.3 85 38.8
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 2.0e-06 58.2 86 40.7
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 4.5e-06 57.0 62 43.5


User provided reference genes

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