Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR284400 Cardamine hirsuta HOM05D002759 ORTHO05D003290 3.7e-51 204.5 98 100.0
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 2.5e-44 181.8 98 86.7
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 2.5e-44 181.8 98 86.7
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 7.4e-44 180.3 98 86.7
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 2.2e-43 178.7 98 86.7
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 2.2e-43 178.7 98 84.7
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 8.2e-43 176.8 98 85.7
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 8.2e-43 176.8 98 85.7
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 1.1e-42 176.4 98 84.7
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 4.1e-42 174.5 98 83.7
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 1.3e-40 169.5 98 83.7
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 1.3e-40 169.5 98 83.7
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 2.2e-40 168.7 98 83.7
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 2.2e-40 168.7 98 83.7
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 3.8e-40 167.9 98 79.6
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 7.2e-39 163.7 98 78.6
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 6.7e-37 157.1 98 76.5
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 6.1e-30 134.0 98 64.3
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 1.6e-22 109.4 98 51.0
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 6.1e-22 107.5 98 53.1
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 6.1e-22 107.5 98 49.0
AL7G28920 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 1.0e-21 106.7 98 51.0
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 1.4e-21 106.3 98 52.0
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.4e-21 106.3 98 54.1
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 1.8e-21 105.9 98 49.0
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 5.2e-21 104.4 98 51.0
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 8.8e-21 103.6 98 52.0
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 1.1e-20 103.2 98 51.0
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 1.5e-20 102.8 98 51.0
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 1.5e-20 102.8 98 49.0
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 2.0e-20 102.4 98 51.0
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 2.0e-20 102.4 98 48.0
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 5.7e-20 100.9 99 50.5
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.3e-19 99.8 98 45.9
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 1.7e-19 99.4 98 46.9
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 3.7e-19 98.2 98 46.9
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 3.7e-19 98.2 98 48.0
AT5G28550 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 4.8e-19 97.8 98 50.0
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 8.2e-19 97.1 99 47.5
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 8.2e-19 97.1 98 43.9
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 8.2e-19 97.1 98 43.9
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 2.4e-18 95.5 98 46.9
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 2.4e-18 95.5 98 46.9
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 3.1e-18 95.1 93 49.5
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 5.3e-18 94.4 94 45.7
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 9.1e-18 93.6 98 40.8
MD00G1111200 Malus domestica HOM05D002759 ORTHO05D003290 1.6e-17 92.8 98 48.0
MD08G1225400 Malus domestica HOM05D002759 ORTHO05D003290 1.6e-17 92.8 98 48.0
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 1.6e-17 92.8 98 48.0
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 2.0e-17 92.4 98 45.9
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 2.0e-17 92.4 98 46.9
Cpa.g.sc148.31 Carica papaya HOM05D002759 ORTHO05D003290 5.9e-17 90.9 77 54.5
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 5.9e-17 90.9 98 42.9
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 7.7e-17 90.5 100 43.0
BcaB05g23798 Brassica carinata HOM05D002759 ORTHO05D003290 1.7e-16 89.4 98 44.9
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 1.7e-16 89.4 94 45.7
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 3.8e-16 88.2 100 47.0
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 3.8e-16 88.2 98 43.9
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 5.0e-16 87.8 98 41.8
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.5e-15 86.3 98 43.9
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 1.5e-15 86.3 98 43.9
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 1.9e-15 85.9 98 41.8
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 2.5e-15 85.5 93 45.2
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 2.5e-15 85.5 93 45.2
ATR0661G443 Amborella trichopoda HOM05D002759 ORTHO05D003290 3.2e-15 85.1 96 41.7
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 3.2e-15 85.1 98 43.9
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.2e-15 85.1 98 43.9
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.2e-15 85.1 98 43.9
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 7.2e-15 84.0 96 43.8
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 9.4e-15 83.6 93 44.1
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 9.4e-15 83.6 100 42.0
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 1.2e-14 83.2 98 40.8
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 1.6e-14 82.8 94 41.5
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 2.1e-14 82.4 94 41.5
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 2.7e-14 82.0 98 41.8
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 4.7e-14 81.3 98 41.8
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 4.7e-14 81.3 98 41.8
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 4.7e-14 81.3 98 41.8
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 1.0e-13 80.1 98 40.8
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.0e-13 80.1 78 43.6
SHI26605 Sapria himalayana HOM05D002759 ORTHO05D003290 1.0e-13 80.1 111 37.8
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 2.3e-13 79.0 98 42.9
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 4.0e-13 78.2 98 39.8
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 5.2e-13 77.8 93 40.9
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 1.5e-12 76.3 98 42.9
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.0e-12 75.9 98 38.8
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.0e-12 75.9 98 38.8
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 2.6e-12 75.5 98 39.8
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 3.4e-12 75.1 93 40.9
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 5.7e-12 74.3 98 36.7
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 9.8e-12 73.6 98 41.8
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 9.8e-12 73.6 98 43.9
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 2.8e-11 72.0 98 40.8
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 2.8e-11 72.0 98 40.8
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 6.3e-11 70.9 98 41.8
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 8.3e-11 70.5 100 35.0
MD00G1111100 Malus domestica HOM05D002759 ORTHO05D003290 8.3e-11 70.5 75 46.7
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 3.1e-10 68.6 98 37.8
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.2e-09 66.6 98 34.7
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 1.2e-09 66.6 75 45.3
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 2.7e-09 65.5 98 35.7
Aqoxy3G00698 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 4.5e-09 64.7 98 33.7
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 3.8e-08 61.6 98 35.7
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 1.1e-07 60.1 98 30.6
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 1.9e-07 59.3 98 34.7
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 4.2e-07 58.2 100 33.0
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 2.1e-06 55.8 98 31.6
C04p02400 Brassica napus HOM05D002759 ORTHO05D000588 3.6e-06 55.1 61 45.9


User provided reference genes

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