Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR284160 Cardamine hirsuta HOM05D003891 ORTHO05D116484 7.4e-39 163.3 77 100.0
AL7G15800 Arabidopsis lyrata HOM05D003891 ORTHO05D004802 8.5e-11 70.1 107 45.8
Aa31LG2G14970 Aethionema arabicum HOM05D003891 ORTHO05D004802 1.4e-10 69.3 86 48.8
AT4G35360 Arabidopsis thaliana HOM05D003891 ORTHO05D004802 3.2e-10 68.2 107 44.9
BcaNung00603 Brassica carinata HOM05D003891 ORTHO05D004802 7.2e-10 67.0 107 43.9
A01p03200 Brassica napus HOM05D003891 ORTHO05D004802 7.2e-10 67.0 107 43.9
BraA01t00305Z Brassica rapa HOM05D003891 ORTHO05D004802 7.2e-10 67.0 107 43.9
Thhalv10025517m.g Eutrema salsugineum HOM05D003891 ORTHO05D004802 7.2e-10 67.0 107 43.9
Peaxi162Scf00362g00144 Petunia axillaris HOM05D003891 ORTHO05D004802 7.2e-10 67.0 88 46.6
Sp7g33150 Schrenkiella parvula HOM05D003891 ORTHO05D004802 7.2e-10 67.0 107 43.9
Phvul.004G127600 Phaseolus vulgaris HOM05D003891 ORTHO05D004802 9.4e-10 66.6 107 43.0
RcHm_v2.0_Chr6g0281141 Rosa chinensis HOM05D003891 ORTHO05D004802 9.4e-10 66.6 107 43.0
VMungo0464G1760 Vigna mungo HOM05D003891 ORTHO05D004802 9.4e-10 66.6 107 43.0
C01p03550 Brassica napus HOM05D003891 ORTHO05D004802 1.6e-09 65.9 107 43.0
BolC1t00344H Brassica oleracea HOM05D003891 ORTHO05D004802 1.6e-09 65.9 107 43.0
Carub.0007s0494 Capsella rubella HOM05D003891 ORTHO05D004802 1.6e-09 65.9 107 43.9
THA.LOC104807410 Tarenaya hassleriana HOM05D003891 ORTHO05D004802 1.6e-09 65.9 86 46.5
FvH4_2g16941 Fragaria vesca HOM05D003891 ORTHO05D004802 2.1e-09 65.5 108 41.7
CARHR243690 Cardamine hirsuta HOM05D003891 ORTHO05D004802 2.7e-09 65.1 107 42.1
FAN27G1799 Fragaria x ananassa HOM05D003891 ORTHO05D004802 2.7e-09 65.1 87 43.7
CiPaw.05G094100 Carya illinoinensis HOM05D003891 ORTHO05D004802 3.6e-09 64.7 108 41.7
Glyma.09G154000 Glycine max HOM05D003891 ORTHO05D004802 3.6e-09 64.7 107 42.1
Prupe.8G181200 Prunus persica HOM05D003891 ORTHO05D004802 3.6e-09 64.7 107 43.0
FAN24G0882 Fragaria x ananassa HOM05D003891 ORTHO05D004802 4.6e-09 64.3 87 43.7
GSVIVG01023862001 Vitis vinifera HOM05D003891 ORTHO05D004802 6.1e-09 63.9 107 42.1
arahy.Tifrunner.gnm1.ann1.BD83WD Arachis hypogaea HOM05D003891 ORTHO05D004802 7.9e-09 63.5 107 42.1
arahy.Tifrunner.gnm1.ann1.HVI0X6 Arachis hypogaea HOM05D003891 ORTHO05D004802 7.9e-09 63.5 107 42.1
Haze_01964 Corylus avellana HOM05D003891 ORTHO05D004802 7.9e-09 63.5 108 41.7
PGR042G1041 Punica granatum HOM05D003891 ORTHO05D004802 7.9e-09 63.5 107 42.1
Ah.01g017670 Amaranthus hybridus HOM05D003891 ORTHO05D004802 1.0e-08 63.2 107 42.1
Eucgr.H04996 Eucalyptus grandis HOM05D003891 ORTHO05D004802 1.0e-08 63.2 107 42.1
TWI75G0797 Tripterygium wilfordii HOM05D003891 ORTHO05D004802 1.0e-08 63.2 86 44.2
CsaV3_7G002080 Cucumis sativus L. HOM05D003891 ORTHO05D004802 1.4e-08 62.8 107 40.2
CANSAT25G0951 Cannabis sativa HOM05D003891 ORTHO05D004802 1.8e-08 62.4 107 39.3
Ciclev10028695m.g Citrus clementina HOM05D003891 ORTHO05D004802 1.8e-08 62.4 107 40.2
MD05G1141200 Malus domestica HOM05D003891 ORTHO05D004802 1.8e-08 62.4 107 42.1
MD10G1142600 Malus domestica HOM05D003891 ORTHO05D004802 1.8e-08 62.4 107 42.1
arahy.Tifrunner.gnm1.ann1.QM8NH2 Arachis hypogaea HOM05D003891 ORTHO05D004802 2.3e-08 62.0 85 43.5
Carub.0003s3137 Capsella rubella HOM05D003891 ORTHO05D004802 2.3e-08 62.0 107 41.1
CiPaw.06G114500 Carya illinoinensis HOM05D003891 ORTHO05D004802 2.3e-08 62.0 87 42.5
Psat1g106000 Pisum sativum HOM05D003891 ORTHO05D004802 2.3e-08 62.0 107 41.1
arahy.Tifrunner.gnm1.ann1.94LQT9 Arachis hypogaea HOM05D003891 ORTHO05D004802 3.0e-08 61.6 64 50.0
CAN.G234.2 Capsicum annuum HOM05D003891 ORTHO05D004802 3.0e-08 61.6 86 43.0
Dinv41863 Davidia involucrata HOM05D003891 ORTHO05D004802 3.0e-08 61.6 84 42.9
Nn6g31645 Nelumbo nucifera HOM05D003891 ORTHO05D004802 3.0e-08 61.6 86 43.0
HPP92_015472 Vanilla planifolia HOM05D003891 ORTHO05D004802 3.0e-08 61.6 107 40.2
Atru.chr5.3571 Acer truncatum HOM05D003891 ORTHO05D004802 3.9e-08 61.2 109 40.4
Ca_25233_v3 Cicer arietinum L. HOM05D003891 ORTHO05D004802 3.9e-08 61.2 107 41.1
Nitab4.5_0001700g0070 Nicotiana tabacum HOM05D003891 ORTHO05D004802 3.9e-08 61.2 86 43.0
TPR.G10657 Trifolium pratense HOM05D003891 ORTHO05D004802 3.9e-08 61.2 107 40.2
CAN.G1645.6 Capsicum annuum HOM05D003891 ORTHO05D004802 5.1e-08 60.8 87 43.7
Cfa005391 Carpinus fangiana HOM05D003891 ORTHO05D004802 5.1e-08 60.8 82 46.3
QL11p056607 Quercus lobata HOM05D003891 ORTHO05D004802 5.1e-08 60.8 107 40.2
AL3G50220 Arabidopsis lyrata HOM05D003891 ORTHO05D004802 6.7e-08 60.5 86 43.0
AT2G17340 Arabidopsis thaliana HOM05D003891 ORTHO05D004802 6.7e-08 60.5 86 43.0
Cc09_g10890 Coffea canephora HOM05D003891 ORTHO05D004802 6.7e-08 60.5 86 44.2
MBI01_g17246_MAGBIO Magnolia biondii HOM05D003891 ORTHO05D004802 6.7e-08 60.5 81 45.7
Sc08g0002090 Simmondsia chinensis HOM05D003891 ORTHO05D004802 6.7e-08 60.5 107 40.2
ECA233G4850 Erigeron canadensis HOM05D003891 ORTHO05D004802 8.8e-08 60.1 86 43.0
Lsat_1_v5_gn_8_120640 Lactuca sativa HOM05D003891 ORTHO05D004802 8.8e-08 60.1 86 41.9
Lalb_Chr03g0033131 Lupinus albus HOM05D003891 ORTHO05D004802 8.8e-08 60.1 107 41.1
Lalb_Chr19g0131341 Lupinus albus HOM05D003891 ORTHO05D004802 8.8e-08 60.1 107 41.1
AUR62010186 Chenopodium quinoa HOM05D003891 ORTHO05D004802 1.1e-07 59.7 107 41.1
AUR62013187 Chenopodium quinoa HOM05D003891 ORTHO05D004802 1.1e-07 59.7 107 41.1
Rhsim05G0044600 Rhododendron simsii HOM05D003891 ORTHO05D004802 1.1e-07 59.7 86 41.9
Sabra04G0139800 Salix brachista HOM05D003891 ORTHO05D004802 1.1e-07 59.7 86 43.0
Sed0019069 Sechium edule HOM05D003891 ORTHO05D004802 1.1e-07 59.7 107 39.3
Solyc10g074590.2 Solanum lycopersicum HOM05D003891 ORTHO05D004802 1.1e-07 59.7 86 41.9
Sopen10g027080 Solanum pennellii HOM05D003891 ORTHO05D004802 1.1e-07 59.7 86 41.9
PGSC0003DMG400014681 Solanum tuberosum HOM05D003891 ORTHO05D004802 1.1e-07 59.7 86 43.0
Migut.B00004 Erythranthe guttata HOM05D003891 ORTHO05D004802 1.5e-07 59.3 86 41.9
Potri.009G169000 Populus trichocarpa HOM05D003891 ORTHO05D004802 1.5e-07 59.3 107 40.2
Hund00096 Selenicereus undatus HOM05D003891 ORTHO05D004802 1.5e-07 59.3 107 40.2
TPR.G16614 Trifolium pratense HOM05D003891 ORTHO05D004802 1.5e-07 59.3 87 41.4
MELO3C015700.2 Cucumis melo HOM05D003891 ORTHO05D004802 2.0e-07 58.9 86 40.7
Duzib132G1166 Durio zibethinus HOM05D003891 ORTHO05D004802 2.0e-07 58.9 86 41.9
Lj2g0023729 Lotus japonicus HOM05D003891 ORTHO05D004802 2.0e-07 58.9 107 39.3
Lj5g0000118 Lotus japonicus HOM05D003891 ORTHO05D004802 2.0e-07 58.9 108 39.8
Medtr6g060550 Medicago truncatula HOM05D003891 ORTHO05D004802 2.0e-07 58.9 107 39.3
Ca_09895_v3 Cicer arietinum L. HOM05D003891 ORTHO05D004802 2.6e-07 58.5 64 45.3
Manes.15G113400 Manihot esculenta HOM05D003891 ORTHO05D004802 2.6e-07 58.5 86 43.0
Peaxi162Scf00374g00733 Petunia axillaris HOM05D003891 ORTHO05D004802 2.6e-07 58.5 83 42.2
ATR0605G040 Amborella trichopoda HOM05D003891 ORTHO05D004802 3.3e-07 58.2 86 41.9
Lalb_Chr21g0311871 Lupinus albus HOM05D003891 ORTHO05D004802 3.3e-07 58.2 107 39.3
Cpa.g.sc232.5 Carica papaya HOM05D003891 ORTHO05D004802 4.4e-07 57.8 86 41.9
Dinv14180 Davidia involucrata HOM05D003891 ORTHO05D004802 4.4e-07 57.8 86 41.9
Hma1.2p1_0271F.1_g108710 Hydrangea macrophylla HOM05D003891 ORTHO05D004802 4.4e-07 57.8 86 41.9
Lj9A408G77 Lonicera japonica HOM05D003891 ORTHO05D004802 4.4e-07 57.8 86 41.9
vmacro10882 Vaccinium macrocarpon HOM05D003891 ORTHO05D004802 4.4e-07 57.8 86 43.0
CSS0031527 Camellia sinensis var. sinensis HOM05D003891 ORTHO05D004802 5.7e-07 57.4 86 40.7
HanXRQChr16g0515191 Helianthus annuus HOM05D003891 ORTHO05D004802 5.7e-07 57.4 86 41.9
SalBow1G5213 Salvia bowleyana HOM05D003891 ORTHO05D004802 5.7e-07 57.4 86 43.0
Actinidia26326 Actinidia chinensis HOM05D003891 ORTHO05D004802 7.4e-07 57.0 86 41.9
Duzib052G0081 Durio zibethinus HOM05D003891 ORTHO05D004802 7.4e-07 57.0 86 40.7
Medtr1g076720 Medicago truncatula HOM05D003891 ORTHO05D004802 7.4e-07 57.0 87 40.2
PSO210G7370 Papaver somniferum HOM05D003891 ORTHO05D004802 7.4e-07 57.0 86 40.7
PSO761G0136 Papaver somniferum HOM05D003891 ORTHO05D004802 7.4e-07 57.0 86 40.7
Thecc.02G147300 Theobroma cacao HOM05D003891 ORTHO05D004802 7.4e-07 57.0 86 41.9
Gohir.D13G057500 Gossypium hirsutum HOM05D003891 ORTHO05D004802 9.7e-07 56.6 86 39.5
Gorai.013G064800 Gossypium raimondii HOM05D003891 ORTHO05D004802 1.3e-06 56.2 86 39.5
Lj5C171T9 Lonicera japonica HOM05D003891 ORTHO05D004802 1.3e-06 56.2 84 40.5
MD16G1233000 Malus domestica HOM05D003891 ORTHO05D004802 1.3e-06 56.2 89 39.3
Potri.004G207700 Populus trichocarpa HOM05D003891 ORTHO05D004802 1.3e-06 56.2 86 43.0
PGSC0003DMG400016830 Solanum tuberosum HOM05D003891 ORTHO05D004802 1.3e-06 56.2 83 41.0
TAR628G0887 Trochodendron aralioides HOM05D003891 ORTHO05D004802 1.3e-06 56.2 86 41.9
Aqoxy6G01549 Aquilegia oxysepala HOM05D003891 ORTHO05D004802 1.7e-06 55.8 86 39.5
MSTRG.19945 Avicennia marina HOM05D003891 ORTHO05D004802 1.7e-06 55.8 86 40.7
EL10Ac9g21550 Beta vulgaris HOM05D003891 ORTHO05D004802 1.7e-06 55.8 84 41.7
CDE10G0412 Ceratophyllum demersum HOM05D003891 ORTHO05D004802 1.7e-06 55.8 86 40.7
Medtr1g076730 Medicago truncatula HOM05D003891 ORTHO05D004802 1.7e-06 55.8 87 37.9
Ca_09894_v3 Cicer arietinum L. HOM05D003891 ORTHO05D004802 2.2e-06 55.5 87 41.4
Carub.0003s3136 Capsella rubella HOM05D003891 ORTHO05D004802 2.8e-06 55.1 86 40.7
CSS0037328 Camellia sinensis var. sinensis HOM05D003891 ORTHO05D004802 3.7e-06 54.7 80 42.5
unitig_21.g20520 Utricularia gibba HOM05D003891 ORTHO05D004802 3.7e-06 54.7 86 39.5
Psat3g195440 Pisum sativum HOM05D003891 ORTHO05D004802 4.8e-06 54.3 107 38.3
Psat6g112760 Pisum sativum HOM05D003891 ORTHO05D004802 4.8e-06 54.3 87 39.1
Gohir.A13G064300 Gossypium hirsutum HOM05D003891 ORTHO05D004802 8.2e-06 53.5 86 38.4


User provided reference genes

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