Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 2.2e-188 662.1 329 100.0
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 7.0e-171 604.0 329 91.8
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 4.5e-170 601.3 329 91.5
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 1.3e-169 599.7 329 90.0
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 3.8e-169 598.2 329 91.2
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 2.0e-165 585.9 329 88.8
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 3.7e-156 555.1 327 85.0
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 1.1e-152 543.5 327 83.8
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 5.5e-152 541.2 328 83.8
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 5.5e-152 541.2 327 83.2
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 2.0e-141 506.1 335 78.8
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 1.7e-140 503.1 429 65.3
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 3.1e-134 482.3 343 74.1
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 5.4e-123 444.9 347 66.6
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 6.0e-122 441.4 346 65.3
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 5.1e-121 438.3 347 64.0
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 7.3e-120 434.5 345 66.4
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 2.1e-119 433.0 347 65.4
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 3.6e-119 432.2 347 65.7
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 4.7e-119 431.8 344 64.0
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 5.2e-118 428.3 349 65.3
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 3.8e-116 422.2 348 63.8
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 4.1e-115 418.7 339 63.7
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 7.1e-115 417.9 343 65.3
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 9.2e-115 417.5 346 64.2
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 3.5e-114 415.6 300 71.0
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 1.3e-113 413.7 346 64.7
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 3.9e-113 412.1 329 64.1
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 3.3e-112 409.1 346 63.0
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 2.8e-111 406.0 347 59.4
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 4.7e-111 405.2 345 61.7
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 1.4e-110 403.7 336 61.6
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.1e-110 402.5 340 61.5
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 6.9e-110 401.4 330 62.4
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 1.2e-109 400.6 346 61.8
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.5e-109 400.2 342 60.2
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 1.3e-108 397.1 343 60.3
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 4.9e-108 395.2 346 61.3
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 6.4e-108 394.8 352 59.1
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 8.4e-108 394.4 346 59.5
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 1.9e-107 393.3 282 71.6
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 4.2e-107 392.1 327 62.7
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 5.4e-107 391.7 336 60.7
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 3.0e-105 386.0 345 59.4
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 3.9e-105 385.6 279 69.2
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 1.9e-104 383.3 344 57.6
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 7.3e-104 381.3 341 56.6
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 4.0e-102 375.6 348 57.8
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 6.9e-102 374.8 346 56.1
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 9.0e-102 374.4 344 56.7
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 7.6e-101 371.3 342 58.2
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 1.3e-100 370.5 348 55.2
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 2.4e-99 366.3 301 63.1
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 9.3e-99 364.4 351 57.5
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 1.2e-98 364.0 344 56.4
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 3.5e-98 362.5 326 58.0
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 3.5e-98 362.5 343 56.6
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 1.5e-96 357.1 343 57.4
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 1.9e-96 356.7 342 55.8
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 1.3e-95 354.0 353 55.2
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 2.8e-95 352.8 324 55.6
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 6.2e-95 351.7 332 56.0
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 5.3e-94 348.6 318 57.9
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 3.4e-93 345.9 343 54.2
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 3.4e-93 345.9 304 58.9
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 4.5e-93 345.5 327 55.7
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 4.5e-93 345.5 341 54.8
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 5.8e-93 345.1 305 58.0
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 5.8e-93 345.1 343 54.8
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 1.7e-92 343.6 346 53.8
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 1.7e-92 343.6 384 52.1
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 3.2e-91 339.3 356 52.5
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 9.3e-91 337.8 342 55.3
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 2.7e-90 336.3 357 52.9
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 6.7e-89 331.6 313 56.9
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 8.7e-89 331.3 278 58.6
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 1.5e-88 330.5 335 54.0
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 5.6e-88 328.6 340 52.6
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 9.6e-88 327.8 348 53.2
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 3.7e-87 325.9 337 54.6
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 1.1e-86 324.3 301 58.1
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 6.9e-86 321.6 311 56.3
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 4.5e-85 318.9 299 57.9
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 1.4e-83 313.9 286 58.0
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 3.2e-83 312.8 296 55.4
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 1.8e-78 297.0 311 51.4
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 1.8e-78 297.0 330 50.3
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 2.0e-77 293.5 345 47.8
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 4.2e-67 259.2 212 61.3
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 2.0e-64 250.4 212 60.4
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 1.7e-55 220.7 246 48.4
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 1.3e-52 211.1 285 42.5
AUR62022479 Chenopodium quinoa HOM05D006958 ORTHO05D008814 4.0e-49 199.5 175 59.4
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 4.4e-48 196.1 296 42.9
Oeu049903.1 Olea europaea HOM05D006958 ORTHO05D008814 3.8e-44 183.0 175 54.9
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 8.5e-44 181.8 128 75.0
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 4.2e-43 179.5 137 63.5
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 1.0e-41 174.9 192 55.2
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 2.5e-35 153.7 110 73.6
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 3.3e-35 153.3 243 40.7
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 9.5e-35 151.8 265 34.3
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 4.0e-33 146.4 332 31.3
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 4.0e-33 146.4 200 44.5
Os07g0586000 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 5.4e-30 136.0 168 45.2
SEGI_02529 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 6.8e-25 119.0 165 38.2
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 1.5e-24 117.9 93 63.4
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 7.5e-24 115.5 113 52.2
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 3.0e-20 103.6 75 65.3
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 1.2e-18 98.2 81 55.6
Psat7g107960 Pisum sativum HOM05D006958 ORTHO05D008814 3.5e-13 80.1 105 45.7
Glyma.07G264001 Glycine max HOM05D006958 ORTHO05D008814 1.2e-08 65.1 79 50.6
Ah.09g227430 Amaranthus hybridus HOM05D006958 ORTHO05D008814 2.9e-07 60.5 66 48.5
Psat0s3396g0160 Pisum sativum HOM05D006958 ORTHO05D008814 4.9e-07 59.7 37 70.3


User provided reference genes

Program Settings