Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.3e-100 369.8 193 100.0
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 1.0e-97 360.1 193 97.4
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.9e-96 355.9 190 97.4
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 5.6e-96 354.4 193 96.9
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.2e-84 315.8 189 88.4
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.2e-84 315.8 189 88.4
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 7.1e-83 310.8 190 87.4
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 7.1e-83 310.8 190 87.4
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 9.3e-83 310.5 189 86.8
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 2.3e-81 305.8 189 87.3
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 2.3e-81 305.8 189 87.3
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 5.1e-81 304.7 190 85.3
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 1.1e-80 303.5 193 85.0
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 1.5e-80 303.1 193 85.0
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 1.5e-80 303.1 193 85.0
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 1.5e-80 303.1 193 85.0
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 1.6e-79 299.7 189 85.2
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 2.2e-79 299.3 158 98.1
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 3.7e-79 298.5 183 85.8
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 3.7e-79 298.5 183 85.8
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 1.4e-78 296.6 190 83.2
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 2.4e-78 295.8 191 83.8
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 6.9e-78 294.3 189 83.1
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 4.5e-77 291.6 189 84.1
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 4.5e-77 291.6 189 84.1
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 4.5e-77 291.6 189 84.1
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 5.9e-77 291.2 187 82.9
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 5.9e-77 291.2 190 83.2
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 5.9e-77 291.2 190 83.2
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 1.7e-76 289.7 190 83.2
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 3.8e-76 288.5 192 82.3
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 3.8e-76 288.5 189 83.6
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 1.9e-75 286.2 190 82.1
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.5e-75 285.8 190 81.6
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 4.2e-75 285.0 185 83.2
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 4.2e-75 285.0 185 83.2
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 4.2e-75 285.0 179 84.4
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 4.2e-75 285.0 190 81.1
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 7.2e-75 284.3 190 81.1
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 1.0e-73 280.4 190 80.5
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 1.0e-73 280.4 190 80.5
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 6.7e-73 277.7 180 82.8
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-72 276.9 171 86.0
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 2.5e-72 275.8 146 97.9
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 4.3e-72 275.0 185 81.6
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 4.3e-72 275.0 185 81.6
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 4.3e-72 275.0 185 81.6
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 4.3e-72 275.0 162 89.5
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 2.2e-71 272.7 162 88.9
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 1.1e-70 270.4 182 80.2
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 2.4e-70 269.2 185 79.5
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.5e-67 259.2 152 90.1
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 9.4e-67 257.3 150 90.0
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 9.4e-67 257.3 150 90.0
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 3.0e-65 252.3 178 75.8
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 8.8e-65 250.8 132 97.0
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 8.8e-65 250.8 132 97.0
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 2.6e-64 249.2 183 74.3
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 7.0e-62 241.1 145 86.9
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 1.5e-61 240.0 154 83.1
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 2.0e-61 239.6 158 82.3
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 2.6e-61 239.2 132 92.4
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 6.5e-60 234.6 140 86.4
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 2.1e-58 229.6 147 81.6
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 2.7e-58 229.2 133 88.7
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.3e-55 220.3 140 80.7
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 1.1e-54 217.2 122 92.6
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 1.1e-54 217.2 122 92.6
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 1.9e-51 206.5 141 78.7
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.2e-51 205.7 188 64.9
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.1e-50 203.0 161 71.4
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 4.7e-50 201.8 133 78.9
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 5.2e-49 198.4 161 70.8
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 8.8e-49 197.6 140 75.7
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.4e-46 190.3 123 81.3
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 1.0e-44 184.1 114 85.1
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 2.5e-43 179.5 115 83.5
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 4.2e-43 178.7 97 92.8
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 9.4e-43 177.6 99 91.9
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 9.8e-40 167.5 98 86.7
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 4.1e-38 162.2 86 96.5
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 1.2e-37 160.6 89 91.0
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 1.6e-37 160.2 97 88.7
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.0e-33 147.5 88 88.6
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 3.0e-33 146.0 84 90.5
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 3.9e-28 129.0 75 90.7
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 2.3e-25 119.8 110 61.8
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.0e-24 116.7 80 76.2
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 1.3e-23 114.0 74 79.7
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 1.3e-23 114.0 74 79.7
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 7.0e-22 108.2 64 87.5
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.5e-21 105.9 68 85.3
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 1.0e-20 104.4 81 71.6
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.7e-20 103.6 65 78.5
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 3.0e-20 102.8 97 68.0
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 5.0e-20 102.1 68 79.4
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 2.3e-17 93.2 73 68.5
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 7.5e-16 88.2 76 64.5
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 3.7e-15 85.9 47 91.5
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 4.9e-15 85.5 65 70.8
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.2e-14 82.8 68 63.2
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 3.0e-12 76.3 43 93.0
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.3e-11 72.8 81 54.3
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.6e-10 70.5 53 69.8
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.6e-10 69.3 45 75.6
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 2.3e-09 66.6 59 67.8
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 6.8e-09 65.1 39 79.5
Solyc02g021390.1 Solanum lycopersicum HOM05D007533 ORTHO05D016005 1.1e-06 57.8 38 81.6


User provided reference genes

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