Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 3.5e-141 505.0 258 100.0
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 1.0e-116 423.7 241 93.8
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 1.0e-116 423.7 241 93.8
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 3.1e-25 119.8 129 58.9
CARHR283170 Cardamine hirsuta HOM05D014754 ORTHO05D017434 2.0e-24 117.1 186 45.2
AT2G07773 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 1.3e-23 114.4 186 42.5
ATMG00910 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 1.3e-23 114.4 186 43.0
AT2G07727 Arabidopsis thaliana HOM05D002864 ORTHO05D007972 3.1e-17 93.2 42 100.0
ATMG00220 Arabidopsis thaliana HOM05D002864 ORTHO05D007972 3.1e-17 93.2 42 100.0
A04p09430 Brassica napus HOM05D002864 ORTHO05D007972 3.1e-17 93.2 42 100.0
BolSC28t60373H Brassica oleracea HOM05D002864 ORTHO05D007972 3.1e-17 93.2 42 100.0
BraSC159t45732Z Brassica rapa HOM05D002864 ORTHO05D007972 3.1e-17 93.2 42 100.0
BraSC48t46333Z Brassica rapa HOM05D002864 ORTHO05D007972 3.1e-17 93.2 42 100.0
Thhalv10001270m.g Eutrema salsugineum HOM05D002864 ORTHO05D007972 3.1e-17 93.2 42 100.0
Hma1.2p1_0676F.1_g201980 Hydrangea macrophylla HOM05D002864 ORTHO05D007972 4.1e-17 92.8 42 97.6
Nn1g09936 Nelumbo nucifera HOM05D002864 ORTHO05D007972 4.1e-17 92.8 42 97.6
Nn1g10178 Nelumbo nucifera HOM05D002864 ORTHO05D007972 4.1e-17 92.8 42 97.6
CANSAT16G0027 Cannabis sativa HOM05D002864 ORTHO05D007972 7.0e-17 92.0 42 95.2
Aa31csc705G10 Aethionema arabicum HOM05D002864 ORTHO05D007972 9.1e-17 91.7 42 97.6
RcHm_v2.0_MTg0499071 Rosa chinensis HOM05D002864 ORTHO05D007972 2.7e-16 90.1 42 95.2
Gorai.001G162000 Gossypium raimondii HOM05D002864 ORTHO05D007972 3.5e-16 89.7 42 95.2
Lalb_Chr00c06g0404551 Lupinus albus HOM05D002864 ORTHO05D007972 3.5e-16 89.7 42 95.2
Lalb_Chr00c21g0405421 Lupinus albus HOM05D002864 ORTHO05D007972 3.5e-16 89.7 42 95.2
Lalb_Chr00c24g0407141 Lupinus albus HOM05D002864 ORTHO05D007972 3.5e-16 89.7 42 95.2
Lalb_Chr11g0070121 Lupinus albus HOM05D002864 ORTHO05D007972 3.5e-16 89.7 42 95.2
PGR028G0001 Punica granatum HOM05D002864 ORTHO05D007972 5.9e-16 89.0 42 92.9
Sed0001516 Sechium edule HOM05D002864 ORTHO05D007972 5.9e-16 89.0 42 92.9
unitig_87.g28007 Utricularia gibba HOM05D002864 ORTHO05D007972 5.9e-16 89.0 42 92.9
HanXRQMTg0579511 Helianthus annuus HOM05D002864 ORTHO05D007972 1.0e-15 88.2 42 90.5
CsaV3_UNG209910 Cucumis sativus L. HOM05D002864 ORTHO05D007972 1.3e-15 87.8 42 92.9
Solyc00g500240.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.3e-15 87.8 43 90.7
Solyc00g500364.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.3e-15 87.8 43 90.7
VMungo0647G2443 Vigna mungo HOM05D002864 ORTHO05D007972 1.3e-15 87.8 42 90.5
CAN.G1321.7 Capsicum annuum HOM05D002864 ORTHO05D007972 1.7e-15 87.4 42 92.9
CAN.G539.2 Capsicum annuum HOM05D002864 ORTHO05D007972 1.7e-15 87.4 42 92.9
Psat6g041400 Pisum sativum HOM05D002864 ORTHO05D007972 1.7e-15 87.4 42 92.9
SabraMtG0009000 Salix brachista HOM05D002864 ORTHO05D007972 1.7e-15 87.4 42 92.9
Zm00001eb126090 Zea mays HOM05D002864 ORTHO05D007972 1.7e-15 87.4 42 92.9
Zm00001eb187520 Zea mays HOM05D002864 ORTHO05D007972 1.7e-15 87.4 42 92.9
Zm00001eb436400 Zea mays HOM05D002864 ORTHO05D007972 1.7e-15 87.4 42 92.9
Zm00001eb438850 Zea mays HOM05D002864 ORTHO05D007972 1.7e-15 87.4 42 92.9
Zm00001eb440640 Zea mays HOM05D002864 ORTHO05D007972 1.7e-15 87.4 42 92.9
SHI50326 Sapria himalayana HOM05D002864 ORTHO05D007972 2.9e-15 86.7 42 90.5
SHI54530 Sapria himalayana HOM05D002864 ORTHO05D007972 2.9e-15 86.7 42 90.5
Peaxi162Scf00296g00719 Petunia axillaris HOM05D002864 ORTHO05D007972 5.0e-15 85.9 41 92.7
Solyc09g050020.3 Solanum lycopersicum HOM05D002864 ORTHO05D007972 5.0e-15 85.9 42 90.5
Lj2P1221T104 Lonicera japonica HOM05D014754 ORTHO05D017434 2.5e-14 83.6 166 38.6
SHI54776 Sapria himalayana HOM05D002864 ORTHO05D007972 2.5e-14 83.6 41 87.8
LjContig00315g0014259 Lotus japonicus HOM05D002864 ORTHO05D007972 4.2e-14 82.8 40 90.0
LjContig00439g0009771 Lotus japonicus HOM05D002864 ORTHO05D007972 4.2e-14 82.8 40 90.0
LjContig00446g0017432 Lotus japonicus HOM05D002864 ORTHO05D007972 4.2e-14 82.8 40 90.0
DCAR_032458 Daucus carota HOM05D002864 ORTHO05D007972 3.6e-13 79.7 42 85.7
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 1.0e-12 78.2 39 89.7
Nitab4.5_0029129g0010 Nicotiana tabacum HOM05D002864 ORTHO05D007972 1.4e-12 77.8 43 83.7
AT2G07681 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 2.0e-11 73.9 115 40.9
Oeu043609.1 Olea europaea HOM05D002864 ORTHO05D007972 9.8e-11 71.6 63 60.3
FvH4_2g28560 Fragaria vesca HOM05D014754 ORTHO05D017434 2.2e-10 70.5 172 35.5
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 5.4e-09 65.9 36 94.4
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 5.4e-09 65.9 36 94.4
Lj2A1231T102 Lonicera japonica HOM05D000743 ORTHO05D000580 1.2e-08 64.7 146 40.4
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 7.7e-08 62.0 34 94.1
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 1.0e-07 61.6 42 83.3
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 2.2e-07 60.5 34 91.2
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 2.2e-07 60.5 34 91.2
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 2.2e-07 60.5 34 91.2
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 2.9e-07 60.1 35 88.6
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 2.9e-07 60.1 35 91.4
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 3.8e-07 59.7 72 52.8
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 3.8e-07 59.7 72 52.8
Cc00_g01730 Coffea canephora HOM05D014754 ORTHO05D017434 5.0e-07 59.3 112 38.4
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 5.0e-07 59.3 44 79.5
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 8.5e-07 58.5 35 88.6
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 1.1e-06 58.2 34 88.2
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.1e-06 58.2 34 91.2
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-06 58.2 35 85.7
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.9e-06 57.4 34 88.2
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 1.9e-06 57.4 35 85.7
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 1.9e-06 57.4 35 85.7
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 2.5e-06 57.0 34 82.4
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.5e-06 57.0 34 88.2
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.5e-06 57.0 35 85.7
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 3.2e-06 56.6 34 88.2
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 3.2e-06 56.6 34 88.2
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 3.2e-06 56.6 34 88.2
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 4.2e-06 56.2 34 85.3
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.2e-06 56.2 41 70.7
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 4.2e-06 56.2 75 53.3
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 4.2e-06 56.2 75 53.3
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 5.5e-06 55.8 75 53.3
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 9.4e-06 55.1 35 82.9


User provided reference genes

Program Settings