Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 2.0e-162 575.9 322 100.0
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 1.3e-118 430.3 335 78.5
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 1.5e-109 400.2 329 74.8
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 1.7e-108 396.7 329 74.2
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 1.4e-102 377.1 332 72.0
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 8.8e-102 374.4 328 72.6
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 1.2e-95 354.0 334 71.9
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 4.7e-95 352.1 331 71.6
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 8.0e-95 351.3 327 72.8
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 5.2e-94 348.6 331 71.6
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 6.3e-76 288.5 221 77.4
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 2.3e-73 280.0 372 55.1
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 1.9e-72 276.9 365 55.6
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.0e-70 271.2 371 53.1
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 5.7e-69 265.4 371 49.1
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 2.9e-68 263.1 360 52.5
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 9.2e-67 258.1 361 51.2
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 1.6e-66 257.3 358 51.1
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 3.5e-66 256.1 353 51.3
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 7.8e-66 255.0 348 48.6
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.7e-65 253.8 361 53.5
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 2.3e-65 253.4 361 53.5
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 3.0e-65 253.1 325 52.0
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 1.1e-64 251.1 354 49.2
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.5e-64 250.0 343 58.0
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 3.3e-64 249.6 370 54.1
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 3.3e-64 249.6 373 49.1
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 5.6e-64 248.8 332 53.3
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.6e-63 247.3 367 49.6
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 1.6e-63 247.3 377 48.0
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 2.1e-63 246.9 372 50.0
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.8e-63 246.5 372 51.1
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 4.7e-63 245.7 355 51.0
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 6.2e-63 245.4 360 52.8
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 1.0e-62 244.6 357 53.2
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.4e-62 244.2 371 50.7
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.8e-62 243.8 361 50.1
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.3e-62 243.4 373 50.7
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 3.1e-62 243.0 377 52.3
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.0e-62 242.7 362 50.6
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 4.0e-62 242.7 369 51.2
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 4.0e-62 242.7 380 50.3
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 6.8e-62 241.9 349 53.3
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.5e-61 240.7 366 50.0
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.5e-61 240.7 381 52.2
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.5e-61 240.7 344 55.8
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 2.0e-61 240.4 351 49.9
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 3.4e-61 239.6 376 47.9
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 3.4e-61 239.6 238 65.5
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 3.4e-61 239.6 357 52.7
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 5.8e-61 238.8 362 50.0
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 9.8e-61 238.0 348 50.9
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.7e-60 237.3 343 47.5
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 2.9e-60 236.5 371 48.2
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 2.9e-60 236.5 347 51.3
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.9e-60 236.5 363 52.1
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 6.4e-60 235.3 356 51.7
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 1.9e-59 233.8 374 47.3
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 1.9e-59 233.8 348 47.7
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 4.1e-59 232.6 361 50.7
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.2e-58 231.1 339 49.6
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.7e-58 229.9 353 49.9
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 6.0e-58 228.8 374 47.3
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.0e-57 228.0 360 47.2
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 1.0e-57 228.0 374 49.5
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 5.0e-57 225.7 365 52.1
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 6.6e-57 225.3 357 49.9
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 8.6e-57 224.9 379 48.5
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.1e-56 224.6 371 50.4
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.9e-56 223.8 384 48.7
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 4.3e-56 222.6 351 49.3
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.3e-56 222.6 354 51.7
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 5.6e-56 222.2 331 47.7
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 7.3e-56 221.9 354 48.3
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.6e-55 220.7 365 44.7
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.6e-55 220.7 355 48.7
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.1e-55 220.3 347 47.6
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 2.8e-55 219.9 376 50.5
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 4.7e-55 219.2 373 46.6
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 8.1e-55 218.4 357 44.8
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 8.1e-55 218.4 376 49.5
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 2.3e-54 216.9 330 50.6
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.1e-54 216.5 341 46.0
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 3.1e-54 216.5 384 49.2
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.0e-54 216.1 341 46.0
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.0e-54 216.1 340 50.0
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.2e-54 215.7 364 45.1
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.8e-54 215.3 346 49.1
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 6.8e-54 215.3 317 54.9
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 8.9e-54 214.9 343 49.6
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 7.5e-53 211.8 398 47.2
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 3.7e-52 209.5 363 49.0
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 6.4e-52 208.8 351 50.4
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 7.1e-51 205.3 349 45.3
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.2e-50 204.5 374 45.2
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 4.6e-50 202.6 357 45.9
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 1.0e-49 201.4 332 49.1
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.3e-49 200.3 428 41.4
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.9e-49 199.5 288 47.6
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 6.6e-49 198.7 359 44.8
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.1e-48 198.0 307 48.9
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.5e-48 197.6 288 46.9
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.9e-48 197.2 337 43.9
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.9e-48 197.2 356 43.3
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.3e-48 195.3 429 41.7
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 3.6e-47 193.0 361 44.3
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 4.7e-47 192.6 336 41.1
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 8.1e-47 191.8 326 52.5
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 8.1e-47 191.8 343 44.9
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.1e-46 189.9 352 41.5
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.2e-45 188.0 372 43.0
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.4e-45 186.4 434 40.6
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.8e-45 185.7 261 52.5
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 9.9e-45 184.9 361 42.4
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 9.9e-45 184.9 350 40.9
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 1.3e-44 184.5 245 55.9
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 2.2e-44 183.7 338 45.6
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 4.9e-44 182.6 364 44.0
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 8.4e-44 181.8 350 42.3
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 1.4e-43 181.0 332 43.4
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 3.2e-43 179.9 352 45.2
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 2.1e-42 177.2 206 57.3
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 3.5e-42 176.4 306 45.4
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 1.3e-41 174.5 302 43.0
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 6.6e-41 172.2 340 43.2
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 8.6e-41 171.8 338 43.2
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 1.1e-40 171.4 306 44.1
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 1.1e-40 171.4 306 44.1
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 1.9e-40 170.6 321 43.6
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 7.3e-40 168.7 354 40.1
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.2e-39 167.9 216 52.3
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 1.2e-39 167.9 301 40.2
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 4.7e-39 166.0 364 42.9
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 6.2e-39 165.6 311 44.4
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 6.2e-39 165.6 311 44.4
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 2.0e-37 160.6 183 57.9
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 8.4e-36 155.2 346 37.9
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 1.1e-35 154.8 313 41.2
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 4.2e-35 152.9 305 40.0
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 7.1e-35 152.1 329 39.2
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 2.7e-34 150.2 329 43.5
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 2.3e-33 147.1 353 40.2
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 3.0e-33 146.7 343 39.4
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 5.1e-33 146.0 313 40.9
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 6.6e-33 145.6 352 42.6
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 7.3e-32 142.1 376 39.1
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.1e-31 140.6 251 43.4
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 2.6e-29 133.7 230 45.7
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 4.5e-29 132.9 334 35.3
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 4.5e-29 132.9 320 36.2
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 7.6e-29 132.1 287 37.6
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 3.2e-27 126.7 389 36.2
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 9.3e-27 125.2 271 39.5
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.3e-25 121.3 354 35.6
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.3e-25 121.3 354 35.6
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 6.7e-25 119.0 251 41.0
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 1.1e-22 111.7 359 37.9
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.8e-22 110.9 253 39.5
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 2.4e-22 110.5 239 40.6
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 2.4e-22 110.5 253 39.5
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 9.0e-22 108.6 291 37.1
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.5e-21 106.3 213 45.1
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.4e-20 102.4 123 57.7
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 4.2e-19 99.8 212 39.2
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.0e-17 95.1 126 52.4
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 4.3e-16 89.7 129 53.5
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.5e-13 81.3 303 35.6
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.5e-13 81.3 303 35.6
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.7e-10 70.5 324 31.2
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.9e-10 68.9 59 64.4
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 7.9e-10 68.9 275 29.1
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.8e-09 67.8 59 62.7
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 1.1e-08 65.1 340 28.8
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.5e-08 64.7 126 39.7
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 1.6e-07 61.2 169 39.1


User provided reference genes

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