Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 4.5e-118 428.3 285 100.0
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 1.1e-92 344.0 300 85.0
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 4.0e-90 335.5 306 83.0
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 3.2e-79 299.3 303 77.2
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 3.2e-79 299.3 271 83.8
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 3.5e-78 295.8 295 79.0
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 1.7e-77 293.5 295 71.2
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 1.7e-77 293.5 295 76.6
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 3.0e-77 292.7 295 67.8
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 3.0e-77 292.7 295 67.8
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 6.6e-77 291.6 295 77.3
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 8.7e-77 291.2 295 67.5
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 1.2e-75 287.3 314 72.6
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 2.1e-75 286.6 296 67.9
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 9.9e-73 277.7 289 70.2
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 1.3e-72 277.3 298 69.5
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 4.2e-71 272.3 307 74.9
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 7.1e-71 271.6 270 79.6
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 6.5e-48 195.3 248 56.5
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 4.2e-39 166.0 360 44.7
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.7e-22 109.4 205 42.0
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.1e-22 109.0 205 42.0
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.1e-22 109.0 205 42.0
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.4e-20 102.8 324 32.7
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 2.8e-19 100.1 338 31.4
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.7e-19 99.8 324 31.5
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.4e-18 97.8 322 30.7
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.4e-18 97.8 328 35.4
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.8e-18 97.4 324 32.1
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 3.1e-18 96.7 310 39.4
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.0e-17 94.0 329 35.0
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 5.9e-17 92.4 328 34.5
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.7e-16 90.9 309 29.8
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 2.2e-16 90.5 311 30.2
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 5.0e-16 89.4 211 35.1
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 6.5e-16 89.0 193 39.4
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.1e-15 88.2 214 35.5
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 2.5e-15 87.0 189 38.1
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 9.4e-15 85.1 214 35.0
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 1.2e-14 84.7 199 35.7
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 1.6e-14 84.3 209 36.8
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 1.6e-14 84.3 236 34.3
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.6e-14 84.3 201 33.8
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 4.7e-14 82.8 232 36.2
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 4.7e-14 82.8 232 36.2
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 4.7e-14 82.8 232 36.2
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 6.1e-14 82.4 234 32.5
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 8.0e-14 82.0 290 30.7
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.4e-13 81.3 209 35.9
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 3.0e-13 80.1 250 32.4
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 4.0e-13 79.7 251 33.9
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 4.0e-13 79.7 213 32.9
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 5.2e-13 79.3 161 39.1
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.2e-13 79.3 232 33.2
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 5.2e-13 79.3 185 35.7
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 6.8e-13 79.0 222 34.7
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 1.2e-12 78.2 220 32.3
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 1.2e-12 78.2 215 34.0
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 3.4e-12 76.6 286 28.7
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 5.7e-12 75.9 209 35.4
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 5.7e-12 75.9 209 35.4
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 7.5e-12 75.5 321 29.9
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 9.7e-12 75.1 228 34.2
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.3e-11 74.7 234 31.6
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 1.3e-11 74.7 314 28.7
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 4.8e-11 72.8 187 37.4
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 6.3e-11 72.4 208 31.2
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 6.3e-11 72.4 296 28.0
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 1.1e-10 71.6 191 35.1
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.8e-10 70.9 318 27.7
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 3.1e-10 70.1 206 32.5
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 3.1e-10 70.1 311 27.3
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 3.1e-10 70.1 195 33.8
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 7.0e-10 68.9 221 30.8
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 7.0e-10 68.9 307 26.4
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 9.1e-10 68.6 214 32.7
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.2e-09 68.2 329 26.1
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 1.2e-09 68.2 207 32.9
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.0e-09 67.4 284 28.9
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 2.0e-09 67.4 332 28.3
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.0e-09 67.4 179 32.4
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.0e-09 67.4 199 29.6
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 2.0e-09 67.4 366 29.8
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 3.5e-09 66.6 240 30.8
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.5e-09 66.6 179 33.5
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 3.5e-09 66.6 212 31.1
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 1.0e-08 65.1 193 32.6
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 1.0e-08 65.1 217 30.4
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 1.3e-08 64.7 220 30.5
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 1.7e-08 64.3 158 37.3
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 2.2e-08 63.9 124 37.1
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.8e-08 63.2 179 32.4
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 3.8e-08 63.2 206 33.0
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 3.8e-08 63.2 224 33.0
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 8.5e-08 62.0 160 34.4
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 1.1e-07 61.6 218 30.3
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 1.5e-07 61.2 218 34.9
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.5e-07 60.5 194 30.9
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 2.5e-07 60.5 200 33.0
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 3.2e-07 60.1 226 31.4
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 3.2e-07 60.1 179 31.8
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 4.2e-07 59.7 207 29.5
HanXRQChr12g0377191 Helianthus annuus HOM05D005407 ORTHO05D006544 5.5e-07 59.3 70 54.3
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 1.2e-06 58.2 295 27.5
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 1.6e-06 57.8 184 31.5
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.6e-06 57.8 282 34.0
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 1.6e-06 57.8 316 27.5
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 2.1e-06 57.4 199 32.7
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 2.1e-06 57.4 182 32.4
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 3.6e-06 56.6 299 27.4
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 6.1e-06 55.8 91 38.5


User provided reference genes

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