Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 4.4e-94 348.2 212 100.0
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 1.4e-39 167.2 209 49.8
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 5.3e-39 165.2 211 51.7
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 9.4e-36 154.5 218 47.2
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 2.2e-32 143.3 214 46.7
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 2.2e-32 143.3 217 45.6
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 4.8e-32 142.1 210 46.7
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 6.3e-32 141.7 209 45.5
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 6.3e-32 141.7 209 45.9
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 8.2e-32 141.4 209 45.9
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 1.1e-31 141.0 209 45.9
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 7.7e-30 134.8 210 45.2
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 1.5e-25 120.6 145 48.3
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 1.5e-25 120.6 147 48.3
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 2.6e-25 119.8 152 48.0
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 3.7e-24 115.9 215 42.8
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 2.0e-22 110.2 164 47.0
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 6.5e-21 105.1 154 44.2
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 1.9e-12 77.0 206 34.0
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 5.6e-12 75.5 215 34.4
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 7.3e-12 75.1 151 37.7
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 8.0e-11 71.6 118 39.8
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 1.4e-10 70.9 192 32.8
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 1.8e-10 70.5 227 31.7
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 1.8e-10 70.5 138 37.7
BcaC01g02700 Brassica carinata HOM05D005900 ORTHO05D007306 2.3e-10 70.1 214 36.0
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 2.3e-10 70.1 221 33.9
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 3.0e-10 69.7 223 32.3
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 4.0e-10 69.3 231 31.2
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 4.0e-10 69.3 219 31.1
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 4.0e-10 69.3 140 39.3
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 6.8e-10 68.6 153 37.9
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 6.8e-10 68.6 157 34.4
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 8.9e-10 68.2 223 32.3
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.2e-09 67.8 160 35.0
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.2e-09 67.8 192 32.8
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 1.5e-09 67.4 191 32.5
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 2.0e-09 67.0 234 39.7
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 2.0e-09 67.0 227 32.6
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 2.0e-09 67.0 195 34.4
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 4.4e-09 65.9 208 32.7
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 4.4e-09 65.9 215 32.6
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 5.7e-09 65.5 237 34.2
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 9.8e-09 64.7 160 33.8
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 9.8e-09 64.7 227 33.5
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 9.8e-09 64.7 223 32.3
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.7e-08 63.9 134 38.1
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 1.7e-08 63.9 225 30.7
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.7e-08 63.9 225 30.7
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 1.7e-08 63.9 128 40.6
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 2.9e-08 63.2 206 33.0
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 2.9e-08 63.2 128 41.4
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 3.7e-08 62.8 221 31.2
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 4.9e-08 62.4 206 30.6
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 4.9e-08 62.4 202 31.2
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 4.9e-08 62.4 132 35.6
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 6.4e-08 62.0 187 32.1
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 8.3e-08 61.6 204 30.9
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 1.1e-07 61.2 205 28.8
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 1.4e-07 60.8 112 35.7
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 1.8e-07 60.5 198 32.3
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.8e-07 60.5 195 32.8
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.8e-07 60.5 130 36.2
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 1.8e-07 60.5 152 31.6
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 2.4e-07 60.1 159 30.2
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.4e-07 60.1 211 27.5
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 2.4e-07 60.1 143 35.0
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 3.2e-07 59.7 196 32.1
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 4.1e-07 59.3 216 31.5
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 4.1e-07 59.3 227 30.8
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 4.1e-07 59.3 222 28.4
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 5.4e-07 58.9 210 29.0
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 7.0e-07 58.5 142 34.5
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 7.0e-07 58.5 226 29.2
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 9.2e-07 58.2 209 29.2
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 9.2e-07 58.2 200 29.0
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 9.2e-07 58.2 200 28.5
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 9.2e-07 58.2 161 29.2
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 2.0e-06 57.0 196 31.6
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 2.0e-06 57.0 209 29.7
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 3.5e-06 56.2 222 30.2
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 5.9e-06 55.5 161 32.3


User provided reference genes

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