Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 7.9e-40 166.8 92 100.0
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 2.7e-32 141.7 86 90.7
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.7e-32 141.7 86 89.5
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 8.8e-31 136.7 86 86.0
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 4.8e-29 131.0 86 79.1
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 5.3e-28 127.5 86 82.6
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 7.0e-28 127.1 86 80.2
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 2.7e-27 125.2 86 79.1
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 1.7e-26 122.5 86 79.1
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.7e-26 122.5 86 79.1
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 1.7e-26 122.5 86 79.1
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 8.5e-26 120.2 86 77.9
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.9e-25 119.0 86 70.9
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 4.2e-25 117.9 86 73.3
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 5.5e-25 117.5 86 70.9
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 5.5e-25 117.5 86 72.1
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 7.2e-25 117.1 86 69.8
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 1.2e-24 116.3 86 69.8
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 1.2e-24 116.3 86 70.9
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.6e-24 115.9 86 69.8
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.6e-24 115.9 86 69.8
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 2.1e-24 115.5 86 69.8
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 2.7e-24 115.2 86 70.9
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 3.6e-24 114.8 86 69.8
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 3.6e-24 114.8 86 70.9
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 4.7e-24 114.4 86 75.6
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 4.7e-24 114.4 86 67.4
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 8.0e-24 113.6 86 67.4
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.8e-23 112.5 86 66.3
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.8e-23 112.5 86 66.3
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 2.3e-23 112.1 86 68.6
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 2.3e-23 112.1 86 68.6
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 2.3e-23 112.1 86 68.6
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 3.0e-23 111.7 86 66.3
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 3.0e-23 111.7 86 66.3
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 3.0e-23 111.7 86 66.3
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 6.8e-23 110.5 86 65.1
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 6.8e-23 110.5 86 66.3
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.5e-22 109.4 86 64.0
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.5e-22 109.4 86 66.3
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 2.0e-22 109.0 86 67.4
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 2.0e-22 109.0 86 65.1
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 3.4e-22 108.2 86 67.4
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 4.4e-22 107.8 86 62.8
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 4.4e-22 107.8 86 65.1
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 9.8e-22 106.7 86 64.0
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.3e-21 106.3 86 67.4
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 1.3e-21 106.3 86 67.4
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 1.3e-21 106.3 86 64.0
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.3e-21 106.3 86 64.0
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 1.3e-21 106.3 86 68.6
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 1.7e-21 105.9 86 73.3
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 2.2e-21 105.5 86 66.3
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 2.2e-21 105.5 86 64.0
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.2e-21 105.5 86 65.1
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 2.8e-21 105.1 86 67.4
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 6.3e-21 104.0 86 61.6
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 6.3e-21 104.0 86 62.8
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 6.3e-21 104.0 86 62.8
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 8.3e-21 103.6 86 65.1
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 8.3e-21 103.6 86 69.8
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 1.1e-20 103.2 86 61.6
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.4e-20 102.8 86 64.0
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 1.4e-20 102.8 86 61.6
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.4e-20 102.8 86 62.8
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 1.4e-20 102.8 86 65.1
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.8e-20 102.4 86 65.1
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.8e-20 102.4 86 65.1
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 1.8e-20 102.4 86 66.3
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 4.1e-20 101.3 86 69.8
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 4.1e-20 101.3 86 64.0
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 4.1e-20 101.3 86 62.8
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 5.4e-20 100.9 86 60.5
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 7.0e-20 100.5 86 59.3
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 9.1e-20 100.1 86 62.8
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 9.1e-20 100.1 86 61.6
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 2.7e-19 98.6 86 60.5
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 2.7e-19 98.6 86 60.5
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 2.7e-19 98.6 86 60.5
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 2.7e-19 98.6 86 60.5
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 2.7e-19 98.6 86 59.3
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 3.5e-19 98.2 86 58.1
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 3.5e-19 98.2 86 65.1
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 3.5e-19 98.2 86 65.1
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 5.9e-19 97.4 86 59.3
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 5.9e-19 97.4 86 59.3
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 5.9e-19 97.4 86 59.3
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 7.7e-19 97.1 86 64.0
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 2.2e-18 95.5 86 57.0
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 5.0e-18 94.4 86 60.5
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.5e-17 92.8 86 64.0
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 1.5e-17 92.8 86 58.1
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.9e-17 92.4 86 58.1
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 1.9e-17 92.4 86 64.0
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.9e-17 92.4 86 64.0
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.9e-17 92.4 86 64.0
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 1.9e-17 92.4 86 64.0
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 3.2e-17 91.7 86 59.3
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.5e-17 90.9 86 61.6
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 7.2e-17 90.5 86 55.8
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 1.2e-16 89.7 86 61.6
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 8.0e-16 87.0 85 54.1
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 1.2e-14 83.2 62 72.6
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 1.5e-14 82.8 65 67.7
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 2.6e-14 82.0 86 51.2
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 2.6e-14 82.0 86 53.5
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 7.5e-14 80.5 86 58.1
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 1.3e-13 79.7 86 51.2
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.3e-13 79.7 86 51.2
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 2.2e-13 79.0 79 58.2
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 3.7e-13 78.2 86 51.2
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.1e-12 76.6 86 51.2
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 1.4e-12 76.3 86 50.0
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 6.1e-08 60.8 86 43.0
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 8.0e-08 60.5 86 37.2
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 2.6e-06 55.5 86 45.3
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 2.6e-06 55.5 30 93.3


User provided reference genes

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