Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 8.9e-75 283.5 140 100.0
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 4.1e-64 248.1 137 87.6
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 9.2e-64 246.9 137 88.3
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 2.0e-63 245.7 138 86.2
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 2.3e-62 242.3 137 86.1
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 2.3e-62 242.3 137 86.1
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 3.0e-62 241.9 138 84.8
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 3.0e-62 241.9 137 86.1
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 1.1e-61 240.0 138 86.2
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 1.5e-61 239.6 137 84.7
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 1.2e-60 236.5 139 82.0
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 1.2e-60 236.5 139 82.0
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 2.3e-59 232.3 139 80.6
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 8.9e-59 230.3 139 80.6
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 1.5e-58 229.6 135 82.2
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 2.0e-58 229.2 137 79.6
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 3.4e-58 228.4 136 80.9
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 5.8e-58 227.6 137 81.8
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 5.4e-56 221.1 130 82.3
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 1.6e-52 209.5 137 73.7
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 9.9e-50 200.3 135 69.6
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 1.3e-49 199.9 140 70.7
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 8.4e-49 197.2 135 70.4
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 1.1e-48 196.8 137 69.3
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 1.4e-48 196.4 135 69.6
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 1.4e-48 196.4 132 68.9
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 1.9e-48 196.1 135 68.9
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 2.4e-48 195.7 140 68.6
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 5.4e-48 194.5 135 69.6
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 5.4e-48 194.5 133 70.7
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 7.1e-48 194.1 134 67.9
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 7.1e-48 194.1 133 71.4
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 1.2e-47 193.4 135 68.1
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 1.2e-47 193.4 133 69.9
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 1.2e-47 193.4 133 66.2
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 1.2e-47 193.4 135 68.9
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 2.1e-47 192.6 133 69.2
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 2.1e-47 192.6 133 68.4
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 2.7e-47 192.2 132 69.7
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 3.5e-47 191.8 135 68.9
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 4.6e-47 191.4 133 69.9
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 6.0e-47 191.0 137 67.2
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 6.0e-47 191.0 137 67.2
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 7.8e-47 190.7 133 67.7
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 1.0e-46 190.3 135 68.1
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.0e-46 190.3 133 67.7
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 1.3e-46 189.9 134 68.7
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 1.3e-46 189.9 134 66.4
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 1.7e-46 189.5 135 67.4
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.7e-46 189.5 135 68.1
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.7e-46 189.5 135 67.4
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 2.3e-46 189.1 135 70.4
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 2.3e-46 189.1 133 67.7
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 3.0e-46 188.7 135 65.9
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 3.0e-46 188.7 134 64.2
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 3.9e-46 188.3 135 66.7
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 3.9e-46 188.3 135 63.7
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 5.1e-46 188.0 135 68.1
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 6.6e-46 187.6 135 66.7
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 8.6e-46 187.2 135 67.4
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 8.6e-46 187.2 133 63.2
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 1.9e-45 186.0 133 66.9
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.9e-45 186.0 133 66.2
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 1.9e-45 186.0 135 64.4
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 1.9e-45 186.0 133 65.4
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 2.5e-45 185.7 139 67.6
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 3.3e-45 185.3 135 65.2
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 5.6e-45 184.5 137 63.5
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 5.6e-45 184.5 137 63.5
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 7.3e-45 184.1 136 64.0
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 7.3e-45 184.1 137 63.5
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 9.6e-45 183.7 135 63.7
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 1.2e-44 183.3 135 65.2
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 1.2e-44 183.3 133 67.7
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.2e-44 183.3 132 67.4
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 1.6e-44 183.0 134 64.9
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 4.7e-44 181.4 138 63.0
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 1.1e-43 180.3 135 63.0
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.1e-43 180.3 133 64.7
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 1.1e-43 180.3 137 64.2
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 1.1e-43 180.3 135 63.0
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 1.4e-43 179.9 137 64.2
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 1.8e-43 179.5 135 62.2
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 1.8e-43 179.5 133 62.4
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 3.1e-43 178.7 137 66.4
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 5.2e-43 177.9 136 64.7
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 6.9e-43 177.6 139 61.2
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 8.9e-43 177.2 133 66.2
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 8.9e-43 177.2 135 63.0
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 1.2e-42 176.8 132 65.9
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 3.4e-42 175.3 131 64.9
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 5.8e-42 174.5 106 74.5
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 9.9e-42 173.7 132 65.2
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 1.3e-41 173.3 120 69.2
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 2.9e-41 172.2 119 69.7
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 2.9e-41 172.2 120 70.8
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 2.9e-41 172.2 139 59.7
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 3.8e-41 171.8 133 63.2
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 1.4e-40 169.9 120 70.0
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 1.9e-40 169.5 133 63.2
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 5.4e-40 167.9 130 60.8
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 5.4e-40 167.9 130 60.8
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 1.3e-38 163.3 134 59.0
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 1.3e-38 163.3 118 65.3
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 3.9e-38 161.8 110 68.2
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 6.6e-38 161.0 135 58.5
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 9.6e-37 157.1 134 60.4
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 1.3e-36 156.8 109 65.1
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 3.6e-36 155.2 135 57.0
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 8.1e-36 154.1 83 85.5
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 1.4e-35 153.3 102 68.6
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 3.1e-35 152.1 130 58.5
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.2e-34 150.2 119 60.5
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 1.5e-34 149.8 113 61.1
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 2.6e-34 149.1 137 51.8
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 3.4e-34 148.7 133 55.6
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 9.9e-34 147.1 127 55.9
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 4.2e-32 141.7 128 53.9
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 1.8e-30 136.3 122 54.1
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 1.8e-30 136.3 118 55.9
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 2.3e-30 136.0 109 60.6
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 3.0e-30 135.6 116 54.3
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 7.4e-29 131.0 119 56.3
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 1.4e-27 126.7 96 66.7
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 6.9e-27 124.4 93 66.7
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 8.4e-25 117.5 82 63.4
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 3.2e-24 115.5 87 65.5
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 9.3e-24 114.0 120 46.7
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 1.8e-19 99.8 90 52.2
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 1.1e-13 80.5 90 45.6
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.6e-12 76.6 60 61.7
CAN.G27.69 Capsicum annuum HOM05D005779 ORTHO05D007040 6.7e-06 54.7 34 67.6


User provided reference genes

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