Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR277140 Cardamine hirsuta HOM05D003199 ORTHO05D003528 1.6e-101 372.9 201 100.0
AL8G40380 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 6.8e-60 234.6 184 70.7
AT5G63300 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 1.4e-57 226.9 185 68.6
Thhalv10005605m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 3.3e-54 215.7 192 70.8
Sp2g26420 Schrenkiella parvula HOM05D003199 ORTHO05D003528 1.7e-50 203.4 198 66.7
BcaC03g18193 Brassica carinata HOM05D003199 ORTHO05D003528 6.0e-48 194.9 165 74.5
BolC2t12315H Brassica oleracea HOM05D003199 ORTHO05D003528 6.0e-48 194.9 165 74.5
C02p62560 Brassica napus HOM05D003199 ORTHO05D003528 1.4e-44 183.7 165 72.1
Aa31LG1G18700 Aethionema arabicum HOM05D003199 ORTHO05D003528 1.3e-42 177.2 191 62.8
Carub.0008s2405 Capsella rubella HOM05D003199 ORTHO05D003528 4.9e-34 148.7 114 71.9
MELO3C014875.2 Cucumis melo HOM05D003199 ORTHO05D003528 1.7e-15 87.0 170 34.7
PGR142G2189 Punica granatum HOM05D003199 ORTHO05D003528 8.7e-15 84.7 169 39.6
Atru.chr9.1013 Acer truncatum HOM05D003199 ORTHO05D003528 1.9e-14 83.6 154 46.1
ClCG05G013420 Citrullus lanatus HOM05D003199 ORTHO05D003528 1.9e-14 83.6 187 34.8
CsaV3_3G027140 Cucumis sativus L. HOM05D003199 ORTHO05D003528 3.3e-14 82.8 185 35.7
Sed0014935 Sechium edule HOM05D003199 ORTHO05D003528 3.3e-14 82.8 175 34.3
Nitab4.5_0002911g0010 Nicotiana tabacum HOM05D003199 ORTHO05D003528 5.6e-14 82.0 187 34.8
Nitab4.5_0010637g0020 Nicotiana tabacum HOM05D003199 ORTHO05D003528 5.6e-14 82.0 170 41.8
ECA246G3163 Erigeron canadensis HOM05D003199 ORTHO05D003528 9.6e-14 81.3 184 39.1
Prupe.5G156900 Prunus persica HOM05D003199 ORTHO05D003528 1.6e-13 80.5 119 39.5
Solyc03g110930.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 1.6e-13 80.5 118 44.9
Duzib205G0007 Durio zibethinus HOM05D003199 ORTHO05D003528 2.8e-13 79.7 184 43.5
Lj2g0014633 Lotus japonicus HOM05D003199 ORTHO05D003528 2.8e-13 79.7 180 36.7
Sopen03g030120 Solanum pennellii HOM05D003199 ORTHO05D003528 4.8e-13 79.0 118 44.1
MD17G1012600 Malus domestica HOM05D003199 ORTHO05D003528 8.1e-13 78.2 167 34.1
Oeu011754.1 Olea europaea HOM05D003199 ORTHO05D003528 8.1e-13 78.2 182 34.1
Gohir.A07G053400 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.1e-12 77.8 116 43.1
RcHm_v2.0_Chr2g0175441 Rosa chinensis HOM05D003199 ORTHO05D003528 1.1e-12 77.8 191 38.7
Nitab4.5_0000040g0380 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.4e-12 77.4 187 34.2
Thecc.03G122900 Theobroma cacao HOM05D003199 ORTHO05D003528 1.4e-12 77.4 116 44.8
MSTRG.4586 Avicennia marina HOM05D003199 ORTHO05D003528 1.8e-12 77.0 120 41.7
FvH4_6g53290 Fragaria vesca HOM05D003199 ORTHO05D003528 1.8e-12 77.0 174 40.8
Lalb_Chr02g0157721 Lupinus albus HOM05D003199 ORTHO05D003528 1.8e-12 77.0 172 35.5
Aa31LG2G5470 Aethionema arabicum HOM05D003199 ORTHO05D003528 4.0e-12 75.9 118 37.3
CiPaw.12G035800 Carya illinoinensis HOM05D003199 ORTHO05D003528 4.0e-12 75.9 175 39.4
Eucgr.I01653 Eucalyptus grandis HOM05D003199 ORTHO05D003528 4.0e-12 75.9 122 38.5
FAN02G1758 Fragaria x ananassa HOM05D003199 ORTHO05D003528 4.0e-12 75.9 174 41.4
AUR62003498 Chenopodium quinoa HOM05D003199 ORTHO05D003528 5.3e-12 75.5 161 34.8
FAN05G2482 Fragaria x ananassa HOM05D003199 ORTHO05D003528 9.0e-12 74.7 174 41.4
Glyma.19G090000 Glycine max HOM05D003199 ORTHO05D003528 9.0e-12 74.7 172 40.1
VMungo1383G1719 Vigna mungo HOM05D003199 ORTHO05D003528 9.0e-12 74.7 121 43.8
FAN14G1306 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.2e-11 74.3 174 40.8
Prupe.3G305100 Prunus persica HOM05D003199 ORTHO05D003528 1.2e-11 74.3 175 34.3
Aqoxy5G03579 Aquilegia oxysepala HOM05D003199 ORTHO05D003528 1.5e-11 73.9 119 39.5
Phvul.001G094500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 1.5e-11 73.9 174 36.2
Cc07_g00740 Coffea canephora HOM05D003199 ORTHO05D003528 2.0e-11 73.6 180 41.7
Lsat_1_v5_gn_5_13260 Lactuca sativa HOM05D003199 ORTHO05D003528 2.6e-11 73.2 122 44.3
Glyma.17G181000 Glycine max HOM05D003199 ORTHO05D003528 4.5e-11 72.4 176 34.7
HanXRQChr05g0154721 Helianthus annuus HOM05D003199 ORTHO05D003528 4.5e-11 72.4 122 41.0
THA.LOC104823979 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 5.8e-11 72.0 64 56.2
Gohir.D07G057800 Gossypium hirsutum HOM05D003199 ORTHO05D003528 7.6e-11 71.6 113 40.7
FAN04G2235 Fragaria x ananassa HOM05D003199 ORTHO05D003528 9.9e-11 71.2 86 41.9
Glyma.05G077200 Glycine max HOM05D003199 ORTHO05D003528 9.9e-11 71.2 117 34.2
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea HOM05D003199 ORTHO05D003528 1.3e-10 70.9 67 52.2
DCAR_026209 Daucus carota HOM05D003199 ORTHO05D003528 1.3e-10 70.9 122 43.4
BcaC03g17429 Brassica carinata HOM05D003199 ORTHO05D003528 1.7e-10 70.5 114 39.5
BolC2t11446H Brassica oleracea HOM05D003199 ORTHO05D003528 1.7e-10 70.5 114 39.5
Ciclev10022507m.g Citrus clementina HOM05D003199 ORTHO05D003528 1.7e-10 70.5 176 35.8
Sc07g0004150 Simmondsia chinensis HOM05D003199 ORTHO05D003528 1.7e-10 70.5 178 39.9
Duzib147G1480 Durio zibethinus HOM05D003199 ORTHO05D003528 2.2e-10 70.1 120 38.3
Migut.D01231 Erythranthe guttata HOM05D003199 ORTHO05D003528 2.2e-10 70.1 182 32.4
Gorai.012G087400 Gossypium raimondii HOM05D003199 ORTHO05D003528 2.2e-10 70.1 183 38.3
Potri.001G331600 Populus trichocarpa HOM05D003199 ORTHO05D003528 2.2e-10 70.1 178 34.3
Sabra16G0212600 Salix brachista HOM05D003199 ORTHO05D003528 2.9e-10 69.7 131 37.4
Gohir.D04G077600 Gossypium hirsutum HOM05D003199 ORTHO05D003528 3.8e-10 69.3 183 38.3
RcHm_v2.0_Chr2g0088911 Rosa chinensis HOM05D003199 ORTHO05D003528 3.8e-10 69.3 117 40.2
RcHm_v2.0_Chr2g0088961 Rosa chinensis HOM05D003199 ORTHO05D003528 3.8e-10 69.3 117 40.2
Thhalv10004988m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 4.9e-10 68.9 117 37.6
Gorai.001G061300 Gossypium raimondii HOM05D003199 ORTHO05D003528 4.9e-10 68.9 113 39.8
Lj4g0002784 Lotus japonicus HOM05D003199 ORTHO05D003528 4.9e-10 68.9 119 36.1
Nitab4.5_0005418g0050 Nicotiana tabacum HOM05D003199 ORTHO05D003528 4.9e-10 68.9 118 44.9
RcHm_v2.0_Chr2g0089001 Rosa chinensis HOM05D003199 ORTHO05D003528 4.9e-10 68.9 117 40.2
C02p53770 Brassica napus HOM05D003199 ORTHO05D003528 6.4e-10 68.6 114 38.6
BraA02t08519Z Brassica rapa HOM05D003199 ORTHO05D003528 6.4e-10 68.6 69 49.3
CAN.G1491.4 Capsicum annuum HOM05D003199 ORTHO05D003528 6.4e-10 68.6 133 37.6
Ca_05564_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 1.1e-09 67.8 122 36.9
FAN08G2398 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.1e-09 67.8 128 31.2
Glyma.05G044800 Glycine max HOM05D003199 ORTHO05D003528 1.1e-09 67.8 123 34.1
CAN.G473.92 Capsicum annuum HOM05D003199 ORTHO05D003528 1.4e-09 67.4 104 40.4
DCAR_002949 Daucus carota HOM05D003199 ORTHO05D003528 1.4e-09 67.4 158 40.5
PGR083G2021 Punica granatum HOM05D003199 ORTHO05D003528 1.4e-09 67.4 177 39.5
Gohir.A05G339100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 2.4e-09 66.6 183 37.7
Potri.012G092700 Populus trichocarpa HOM05D003199 ORTHO05D003528 2.4e-09 66.6 61 55.7
Haze_14863 Corylus avellana HOM05D003199 ORTHO05D003528 3.2e-09 66.2 59 57.6
Migut.F00072 Erythranthe guttata HOM05D003199 ORTHO05D003528 4.2e-09 65.9 133 37.6
PGSC0003DMG400015257 Solanum tuberosum HOM05D003199 ORTHO05D003528 4.2e-09 65.9 109 36.7
BraA09t35967Z Brassica rapa HOM05D003199 ORTHO05D003528 5.4e-09 65.5 115 39.1
A02p35140 Brassica napus HOM05D003199 ORTHO05D003528 7.1e-09 65.1 124 37.9
Oeu011964.1 Olea europaea HOM05D003199 ORTHO05D003528 7.1e-09 65.1 113 39.8
Peaxi162Scf00089g00228 Petunia axillaris HOM05D003199 ORTHO05D003528 7.1e-09 65.1 157 36.9
Sp2g16270 Schrenkiella parvula HOM05D003199 ORTHO05D003528 7.1e-09 65.1 117 35.9
EL10Ac7g18075 Beta vulgaris HOM05D003199 ORTHO05D003528 9.3e-09 64.7 107 37.4
BcaB04g19427 Brassica carinata HOM05D003199 ORTHO05D003528 9.3e-09 64.7 114 36.0
BcaC04g23918 Brassica carinata HOM05D003199 ORTHO05D003528 9.3e-09 64.7 58 53.4
C09p03490 Brassica napus HOM05D003199 ORTHO05D003528 9.3e-09 64.7 58 53.4
BolC9t53270H Brassica oleracea HOM05D003199 ORTHO05D003528 9.3e-09 64.7 58 53.4
BcaB07g30185 Brassica carinata HOM05D003199 ORTHO05D003528 1.2e-08 64.3 123 37.4
Medtr4g104210 Medicago truncatula HOM05D003199 ORTHO05D003528 1.2e-08 64.3 160 33.1
A09p03290 Brassica napus HOM05D003199 ORTHO05D003528 1.6e-08 63.9 113 37.2
COL.COLO4_17189 Corchorus olitorius HOM05D003199 ORTHO05D003528 1.6e-08 63.9 115 40.0
Carub.0005s0539 Capsella rubella HOM05D003199 ORTHO05D003528 2.1e-08 63.5 58 55.2
AL5G16270 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 2.7e-08 63.2 118 37.3
Cfa007237 Carpinus fangiana HOM05D003199 ORTHO05D003528 2.7e-08 63.2 109 39.4
FvH4_5g07520 Fragaria vesca HOM05D003199 ORTHO05D003528 2.7e-08 63.2 146 28.1
MSTRG.3260 Avicennia marina HOM05D003199 ORTHO05D003528 3.5e-08 62.8 173 38.2
CSS0036982 Camellia sinensis var. sinensis HOM05D003199 ORTHO05D003528 3.5e-08 62.8 170 38.8
Ca_14371_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 3.5e-08 62.8 191 31.4
Lalb_Chr24g0403341 Lupinus albus HOM05D003199 ORTHO05D003528 3.5e-08 62.8 167 32.9
SGA_v2.0_scaffold44G16909 Striga asiatica HOM05D003199 ORTHO05D003528 3.5e-08 62.8 172 41.9
THA.LOC104825617 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 3.5e-08 62.8 185 36.2
AT3G27160 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 4.6e-08 62.4 118 37.3
Glyma.19G071300 Glycine max HOM05D003199 ORTHO05D003528 4.6e-08 62.4 117 39.3
Lju41C52T19 Lonicera japonica HOM05D003199 ORTHO05D003528 6.0e-08 62.0 64 50.0
SalBow1G6303 Salvia bowleyana HOM05D003199 ORTHO05D003528 7.9e-08 61.6 64 50.0
CARHR148360 Cardamine hirsuta HOM05D003199 ORTHO05D003528 1.0e-07 61.2 126 34.9
Ah.02g120420 Amaranthus hybridus HOM05D003199 ORTHO05D003528 1.3e-07 60.8 131 38.9
Eucgr.J02332 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.3e-07 60.8 62 50.0
Gohir.D09G036100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.3e-07 60.8 124 38.7
Gorai.006G041200 Gossypium raimondii HOM05D003199 ORTHO05D003528 1.3e-07 60.8 124 38.7
VMungo1215G0313 Vigna mungo HOM05D003199 ORTHO05D003528 1.3e-07 60.8 138 33.3
Actinidia36788 Actinidia chinensis HOM05D003199 ORTHO05D003528 1.8e-07 60.5 109 49.5
AUR62025727 Chenopodium quinoa HOM05D003199 ORTHO05D003528 1.8e-07 60.5 113 36.3
Gohir.A09G035300 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.8e-07 60.5 124 38.7
Nn1g07337 Nelumbo nucifera HOM05D003199 ORTHO05D003528 1.8e-07 60.5 134 35.1
CANSAT64G0211 Cannabis sativa HOM05D003199 ORTHO05D003528 2.3e-07 60.1 184 39.7
AUR62017813 Chenopodium quinoa HOM05D003199 ORTHO05D003528 2.3e-07 60.1 161 39.1
AUR62001279 Chenopodium quinoa HOM05D003199 ORTHO05D003528 3.9e-07 59.3 113 35.4
Ciclev10016867m.g Citrus clementina HOM05D003199 ORTHO05D003528 3.9e-07 59.3 186 37.1
HanXRQChr07g0198271 Helianthus annuus HOM05D003199 ORTHO05D003528 3.9e-07 59.3 115 38.3
Lj1g0002355 Lotus japonicus HOM05D003199 ORTHO05D003528 3.9e-07 59.3 106 38.7
SalBow4G2736 Salvia bowleyana HOM05D003199 ORTHO05D003528 3.9e-07 59.3 105 39.0
Atru.chr6.2549 Acer truncatum HOM05D003199 ORTHO05D003528 5.1e-07 58.9 58 51.7
Atru.chr6.2557 Acer truncatum HOM05D003199 ORTHO05D003528 5.1e-07 58.9 58 51.7
CsaV3_1G009300 Cucumis sativus L. HOM05D003199 ORTHO05D003528 5.1e-07 58.9 103 35.0
FAN18G2541 Fragaria x ananassa HOM05D003199 ORTHO05D003528 5.1e-07 58.9 147 28.6
Actinidia36194 Actinidia chinensis HOM05D003199 ORTHO05D003528 6.7e-07 58.5 109 36.7
Thecc.04G034700 Theobroma cacao HOM05D003199 ORTHO05D003528 6.7e-07 58.5 116 37.9
TAR374G1096 Trochodendron aralioides HOM05D003199 ORTHO05D003528 6.7e-07 58.5 185 37.8
arahy.Tifrunner.gnm1.ann1.Z1YI97 Arachis hypogaea HOM05D003199 ORTHO05D003528 1.1e-06 57.8 75 42.7
Manes.17G103700 Manihot esculenta HOM05D003199 ORTHO05D003528 1.1e-06 57.8 119 38.7
Medtr7g029325 Medicago truncatula HOM05D003199 ORTHO05D003528 1.1e-06 57.8 118 32.2
arahy.Tifrunner.gnm1.ann1.VRH5T3 Arachis hypogaea HOM05D003199 ORTHO05D003528 1.5e-06 57.4 56 51.8
Sed0000109 Sechium edule HOM05D003199 ORTHO05D003528 1.5e-06 57.4 121 33.9
Solyc02g068090.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 1.5e-06 57.4 130 35.4
Sopen02g017200 Solanum pennellii HOM05D003199 ORTHO05D003528 1.5e-06 57.4 130 34.6
arahy.Tifrunner.gnm1.ann1.NFT2PX Arachis hypogaea HOM05D003199 ORTHO05D003528 1.9e-06 57.0 108 37.0
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 1.9e-06 57.0 111 36.9
EL10Ac6g15370 Beta vulgaris HOM05D003199 ORTHO05D003528 1.9e-06 57.0 184 37.0
Cpa.g.sc1017.1 Carica papaya HOM05D003199 ORTHO05D003528 1.9e-06 57.0 124 41.9
QL02p071628 Quercus lobata HOM05D003199 ORTHO05D003528 1.9e-06 57.0 108 38.0
RcHm_v2.0_Chr7g0191151 Rosa chinensis HOM05D003199 ORTHO05D003528 1.9e-06 57.0 95 37.9
TPR.G37524 Trifolium pratense HOM05D003199 ORTHO05D003528 1.9e-06 57.0 136 26.5
TWI36G0480 Tripterygium wilfordii HOM05D003199 ORTHO05D003528 1.9e-06 57.0 116 37.1
Ah.03g147440 Amaranthus hybridus HOM05D003199 ORTHO05D003528 2.5e-06 56.6 161 36.0
PGSC0003DMG400006976 Solanum tuberosum HOM05D003199 ORTHO05D003528 3.3e-06 56.2 130 34.6
TAR622G0507 Trochodendron aralioides HOM05D003199 ORTHO05D003528 4.3e-06 55.8 56 50.0
MELO3C002333.2 Cucumis melo HOM05D003199 ORTHO05D003528 5.6e-06 55.5 106 38.7
Dinv33347 Davidia involucrata HOM05D003199 ORTHO05D003528 5.6e-06 55.5 53 54.7
Dinv38468 Davidia involucrata HOM05D003199 ORTHO05D003528 5.6e-06 55.5 55 50.9
Oeu011963.1 Olea europaea HOM05D003199 ORTHO05D003528 5.6e-06 55.5 108 37.0
QL10p005054 Quercus lobata HOM05D003199 ORTHO05D003528 5.6e-06 55.5 186 29.6
VMungo0464G0590 Vigna mungo HOM05D003199 ORTHO05D003528 5.6e-06 55.5 58 50.0
Hma1.2p1_1278F.1_g272370 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 7.4e-06 55.1 53 52.8
unitig_52.g17653 Utricularia gibba HOM05D003199 ORTHO05D003528 7.4e-06 55.1 173 37.6
Lsat_1_v5_gn_2_94161 Lactuca sativa HOM05D003199 ORTHO05D003528 9.6e-06 54.7 116 34.5


User provided reference genes

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