Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 2.0e-65 252.3 130 100.0
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.1e-55 219.9 124 90.3
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 6.1e-54 214.2 124 87.1
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.5e-52 209.5 126 84.9
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 4.4e-52 208.0 124 85.5
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 2.4e-50 202.2 122 82.8
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 4.5e-49 198.0 119 84.0
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.3e-48 195.7 125 78.4
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.9e-47 192.6 124 80.6
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 3.3e-47 191.8 119 80.7
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 5.6e-47 191.0 119 79.8
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 5.6e-47 191.0 119 79.8
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 5.6e-47 191.0 119 79.8
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.2e-46 189.9 119 79.8
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.6e-46 189.5 126 75.4
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.3e-45 185.7 126 72.2
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.3e-45 185.7 121 77.7
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 4.4e-44 181.4 119 73.9
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 4.4e-44 181.4 119 75.6
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 4.4e-44 181.4 119 75.6
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 5.8e-44 181.0 119 73.9
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 5.8e-44 181.0 119 73.9
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 9.8e-44 180.3 126 70.6
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 4.9e-43 177.9 119 73.1
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 2.4e-42 175.6 119 72.3
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 6.2e-38 161.0 119 68.1
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.2e-38 161.0 119 68.1
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.2e-38 161.0 119 68.1
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.2e-38 161.0 119 68.1
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-37 160.2 125 64.0
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.1e-37 158.7 119 67.2
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 8.9e-37 157.1 125 61.6
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.2e-36 156.8 125 60.0
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.5e-36 156.4 124 62.9
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 2.0e-36 156.0 124 61.3
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.6e-36 155.6 119 65.5
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.7e-35 152.9 122 59.0
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 1.7e-35 152.9 122 61.5
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.2e-35 152.5 124 60.5
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 2.9e-35 152.1 123 61.0
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.9e-35 152.1 122 61.5
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 3.7e-35 151.8 120 63.3
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 3.7e-35 151.8 126 59.5
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 6.4e-35 151.0 122 63.9
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 6.4e-35 151.0 126 61.1
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 8.3e-35 150.6 122 63.1
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 8.3e-35 150.6 122 61.5
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 8.3e-35 150.6 121 60.3
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.1e-34 150.2 122 59.8
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.4e-34 149.8 122 59.8
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.4e-34 149.8 122 59.0
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.9e-34 149.4 122 59.8
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.9e-34 149.4 122 61.5
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.9e-34 149.4 123 61.8
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.9e-34 149.4 119 62.2
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.4e-34 149.1 119 63.0
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 2.4e-34 149.1 121 59.5
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 2.4e-34 149.1 121 61.2
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 3.2e-34 148.7 128 57.0
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 3.2e-34 148.7 119 62.2
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 3.2e-34 148.7 119 63.0
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 3.2e-34 148.7 123 61.0
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 3.2e-34 148.7 122 61.5
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 4.1e-34 148.3 119 62.2
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.4e-34 147.9 119 62.2
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 7.0e-34 147.5 122 60.7
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 7.0e-34 147.5 120 60.8
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 7.0e-34 147.5 123 60.2
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 7.0e-34 147.5 122 59.0
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 9.2e-34 147.1 125 59.2
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 9.2e-34 147.1 125 60.8
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.6e-33 146.4 117 61.5
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 2.1e-33 146.0 122 59.8
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.1e-33 146.0 119 62.2
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 2.1e-33 146.0 119 60.5
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 2.1e-33 146.0 122 61.5
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 2.1e-33 146.0 119 62.2
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.7e-33 145.6 121 59.5
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 2.7e-33 145.6 119 62.2
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 2.7e-33 145.6 120 61.7
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 3.5e-33 145.2 125 60.8
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.5e-33 145.2 119 61.3
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 4.6e-33 144.8 119 60.5
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 6.0e-33 144.4 119 60.5
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 7.8e-33 144.1 121 58.7
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 7.8e-33 144.1 121 58.7
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.0e-32 143.7 119 61.3
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.0e-32 143.7 122 59.8
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.0e-32 143.7 125 60.0
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.0e-32 143.7 119 60.5
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.0e-32 143.7 121 58.7
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.3e-32 143.3 126 57.9
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.3e-32 143.3 122 59.0
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 1.3e-32 143.3 122 59.0
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.7e-32 142.9 119 61.3
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.7e-32 142.9 119 61.3
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.7e-32 142.9 121 57.9
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 2.3e-32 142.5 122 59.8
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 2.3e-32 142.5 122 60.7
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 3.0e-32 142.1 126 54.0
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.0e-32 142.1 122 55.7
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 3.0e-32 142.1 125 58.4
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.0e-32 142.1 120 57.5
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 5.1e-32 141.4 121 59.5
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.1e-32 141.4 119 62.2
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 5.1e-32 141.4 119 57.1
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 6.6e-32 141.0 121 57.9
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 8.6e-32 140.6 124 56.5
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.1e-31 140.2 121 60.3
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.5e-31 139.8 125 56.8
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.9e-31 139.4 120 57.5
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.5e-31 139.0 125 58.4
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 4.3e-31 138.3 123 54.5
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 4.3e-31 138.3 122 56.6
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.3e-31 138.3 119 59.7
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 5.6e-31 137.9 122 53.3
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 5.6e-31 137.9 122 58.2
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 5.6e-31 137.9 123 56.9
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 9.5e-31 137.1 122 56.6
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.2e-30 136.7 125 52.8
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.6e-30 136.3 125 56.0
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.6e-30 136.3 122 57.4
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 2.1e-30 136.0 122 54.1
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 2.1e-30 136.0 125 55.2
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 4.7e-30 134.8 124 54.0
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 4.7e-30 134.8 119 55.5
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 4.7e-30 134.8 125 54.4
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 6.2e-30 134.4 122 54.9
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 8.1e-30 134.0 122 54.9
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 8.1e-30 134.0 122 52.5
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 8.1e-30 134.0 125 52.0
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.1e-29 133.7 121 55.4
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.4e-29 133.3 122 56.6
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.8e-29 132.9 119 54.6
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.3e-29 132.5 106 62.3
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 3.1e-29 132.1 120 55.0
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.0e-29 131.7 137 51.1
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 2.0e-28 129.4 122 54.9
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.5e-28 127.5 103 63.1
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 9.9e-28 127.1 119 52.1
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.9e-27 125.6 98 60.2
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.9e-27 125.6 98 60.2
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 6.4e-27 124.4 106 56.6
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.4e-26 123.2 112 54.5
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.4e-26 123.2 125 49.6
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 1.9e-26 122.9 121 53.7
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 3.5e-25 118.6 119 51.3
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 7.8e-25 117.5 123 54.5
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 5.1e-24 114.8 109 54.1
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 1.1e-23 113.6 125 50.4
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.9e-23 112.8 125 47.2
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.9e-23 112.8 118 46.6
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 1.9e-23 112.8 120 46.7
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 5.6e-23 111.3 122 47.5
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 7.3e-23 110.9 112 52.7
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.6e-22 109.8 91 57.1
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 8.1e-22 107.5 133 48.9
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 6.4e-19 97.8 80 61.2
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.9e-15 86.3 68 61.8
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.3e-15 85.5 59 64.4
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.1e-13 79.0 63 54.0
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 6.9e-13 77.8 112 35.7
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.2e-12 77.0 53 66.0
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 5.8e-12 74.7 58 58.6
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 8.4e-11 70.9 63 52.4
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 8.4e-11 70.9 65 53.8
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.3e-10 67.4 52 61.5
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 9.3e-10 67.4 63 54.0
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 4.6e-09 65.1 82 48.8
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 6.0e-09 64.7 95 36.8
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 7.8e-09 64.3 61 54.1
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 7.8e-09 64.3 61 54.1
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 9.6e-07 57.4 62 51.6
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 9.6e-07 57.4 68 48.5
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 2.8e-06 55.8 62 51.6
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 4.8e-06 55.1 61 49.2


User provided reference genes

Program Settings