Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 8.2e-299 1029.6 524 100.0
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 8.3e-267 923.3 531 90.6
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 7.7e-265 916.8 530 89.8
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 1.2e-262 909.4 532 89.1
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 1.8e-261 905.6 528 88.4
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 1.1e-258 896.3 530 87.9
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 4.9e-243 844.3 525 84.2
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 2.4e-242 842.0 536 81.9
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 4.1e-242 841.3 525 83.8
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 7.0e-242 840.5 525 84.0
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 3.5e-241 838.2 530 83.4
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 3.5e-241 838.2 525 83.8
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 4.1e-234 814.7 527 82.5
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 1.3e-216 756.5 529 76.2
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 1.3e-184 650.2 549 63.8
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 1.1e-183 647.1 545 63.9
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.5e-183 646.0 545 63.7
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 2.8e-182 642.5 543 65.0
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 6.3e-182 641.3 545 62.9
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 1.5e-180 636.7 543 63.2
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 2.6e-180 636.0 548 62.8
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 1.0e-179 634.0 525 64.4
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 4.2e-178 628.6 549 63.0
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 9.4e-178 627.5 542 62.5
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 1.6e-177 626.7 546 61.2
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 4.6e-177 625.2 562 61.9
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 4.6e-177 625.2 533 62.5
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 1.4e-176 623.6 553 60.8
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 2.6e-175 619.4 445 69.9
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 3.3e-175 619.0 566 61.7
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 4.4e-175 618.6 549 60.7
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 5.7e-175 618.2 510 65.1
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 5.7e-175 618.2 478 67.2
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 2.8e-174 615.9 528 62.3
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 1.7e-171 606.7 560 60.0
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 8.5e-171 604.4 462 68.6
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 8.5e-171 604.4 508 63.0
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.0e-168 597.4 521 61.2
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 3.9e-168 595.5 459 68.6
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 6.7e-168 594.7 558 58.4
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 3.3e-167 592.4 549 59.2
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 5.7e-167 591.7 462 67.5
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 3.7e-166 589.0 549 58.1
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 6.3e-166 588.2 462 66.7
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 1.4e-165 587.0 558 59.7
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 1.4e-165 587.0 462 66.7
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 1.8e-165 586.6 518 61.2
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 4.1e-165 585.5 471 66.2
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 9.1e-165 584.3 473 65.3
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 7.7e-164 581.3 543 59.5
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 2.2e-163 579.7 453 66.2
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 3.8e-163 578.9 496 61.1
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 5.0e-163 578.6 472 64.4
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 1.1e-162 577.4 531 59.3
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 1.5e-162 577.0 543 59.5
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 1.5e-162 577.0 472 63.1
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 2.5e-162 576.2 537 57.9
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.2e-162 575.5 512 60.9
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 5.5e-162 575.1 464 66.2
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 5.5e-162 575.1 512 60.7
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 7.2e-162 574.7 531 59.1
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 9.4e-162 574.3 549 56.6
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.6e-161 573.5 514 60.7
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 2.7e-161 572.8 486 62.1
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.7e-161 572.0 512 60.7
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.7e-161 572.0 513 60.4
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 6.1e-161 571.6 523 64.2
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 6.1e-161 571.6 547 57.6
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 8.0e-161 571.2 564 57.6
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 1.8e-160 570.1 602 53.5
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 1.8e-160 570.1 536 57.8
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.3e-160 569.7 512 60.5
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 5.7e-159 565.1 518 60.2
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 9.7e-159 564.3 551 56.4
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.7e-158 563.5 430 66.0
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 3.7e-158 562.4 536 58.8
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 3.1e-157 559.3 436 66.1
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 7.7e-156 554.7 481 62.2
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 2.9e-155 552.7 529 58.4
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 2.9e-155 552.7 511 58.9
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 8.5e-155 551.2 515 58.4
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 2.5e-154 549.7 516 56.4
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 1.2e-153 547.4 520 56.7
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 2.7e-153 546.2 517 60.0
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 5.7e-151 538.5 526 58.4
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 1.4e-149 533.9 536 56.0
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 1.8e-149 533.5 545 56.0
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 5.4e-149 531.9 528 56.2
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 2.0e-148 530.0 468 60.5
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 5.9e-148 528.5 554 55.4
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 5.0e-147 525.4 437 63.8
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 5.0e-147 525.4 464 61.9
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 2.3e-144 516.5 535 56.1
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 8.8e-144 514.6 409 63.1
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 1.5e-143 513.8 433 61.9
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 2.8e-137 493.0 444 59.7
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 6.1e-137 491.9 503 55.7
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 8.9e-136 488.0 540 52.6
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 1.3e-134 484.2 676 44.8
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 2.4e-133 479.9 540 53.5
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 2.4e-133 479.9 535 52.5
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 1.6e-132 477.2 325 73.2
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 3.0e-131 473.0 500 51.6
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 2.5e-130 469.9 329 72.9
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 4.9e-126 455.7 345 68.1
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.4e-125 454.1 515 49.3
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.2e-124 451.1 413 57.9
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.0e-123 448.0 461 55.1
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 4.4e-103 379.4 427 51.8
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 2.4e-101 373.6 313 64.2
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 2.9e-94 350.1 369 50.7
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.2e-92 344.7 555 42.5
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 6.2e-89 332.4 260 65.8
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.1e-84 317.4 237 61.6
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.1e-69 268.5 222 64.0
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 1.8e-67 261.2 302 51.0
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 7.4e-66 255.8 509 35.4
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 1.2e-63 248.4 496 35.1
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 4.1e-56 223.4 557 31.6
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 6.7e-43 179.5 242 46.3
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.2e-38 164.5 95 86.3
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 6.3e-33 146.4 143 51.0
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 2.0e-31 141.4 203 37.4
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.5e-29 135.2 234 39.7
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 1.3e-22 112.1 80 66.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 2.3e-22 111.3 63 84.1
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 5.6e-21 106.7 136 43.4
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 6.0e-15 86.7 120 51.7
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 5.6e-13 80.1 84 51.2
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 3.0e-06 57.8 49 63.3


User provided reference genes

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