Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 1.5e-122 443.0 233 100.0
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 2.8e-110 402.1 233 89.7
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 1.0e-107 393.7 233 89.3
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 1.7e-107 392.9 234 86.3
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 9.5e-106 387.1 234 85.9
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 8.9e-104 380.6 234 82.1
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 4.9e-102 374.8 235 86.0
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 1.4e-101 373.2 235 85.5
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 1.6e-97 359.8 238 81.1
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 3.1e-96 355.5 236 81.8
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 3.4e-95 352.1 251 78.9
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.4e-93 346.7 231 79.2
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 3.2e-93 345.5 231 76.2
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 3.5e-92 342.0 238 80.3
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 3.0e-83 312.4 212 80.7
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 1.9e-82 309.7 236 66.1
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 5.6e-82 308.1 236 65.7
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 4.7e-81 305.1 225 65.8
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 8.1e-81 304.3 236 64.4
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.1e-80 303.9 237 66.2
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 3.1e-80 302.4 235 66.0
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 1.5e-79 300.1 229 64.6
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 2.0e-79 299.7 225 67.1
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 2.6e-79 299.3 213 79.3
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 4.4e-79 298.5 231 65.8
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 5.8e-79 298.1 231 64.9
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 7.6e-79 297.7 238 66.8
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 2.9e-78 295.8 232 65.1
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 2.4e-77 292.7 234 68.4
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.2e-77 292.4 231 63.2
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.6e-76 290.0 236 62.3
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 1.6e-76 290.0 236 64.4
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 2.7e-76 289.3 231 63.6
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 7.8e-76 287.7 229 65.1
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 1.0e-75 287.3 234 63.2
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 1.7e-75 286.6 236 61.9
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 2.3e-75 286.2 244 61.5
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 6.6e-75 284.6 231 62.3
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 8.6e-75 284.3 238 62.2
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.9e-74 283.1 233 61.8
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 5.6e-74 281.6 234 62.0
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 7.3e-74 281.2 235 66.0
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.2e-73 280.4 234 61.5
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.2e-73 280.4 233 61.4
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 4.7e-73 278.5 234 60.7
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 8.1e-73 277.7 225 64.0
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.8e-72 276.6 226 65.0
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 1.8e-72 276.6 230 63.9
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 2.4e-72 276.2 229 62.0
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 4.0e-72 275.4 235 60.0
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 4.0e-72 275.4 229 64.6
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 1.2e-71 273.9 231 60.6
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 1.5e-71 273.5 232 61.2
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 1.5e-71 273.5 226 61.1
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 3.4e-71 272.3 232 62.5
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 3.4e-71 272.3 227 61.7
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 5.8e-71 271.6 236 60.6
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 7.6e-71 271.2 225 63.1
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 2.2e-70 269.6 231 59.7
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 1.1e-69 267.3 236 60.6
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 1.1e-69 267.3 229 57.6
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.2e-68 263.8 227 63.0
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 3.5e-68 262.3 212 62.7
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 2.3e-67 259.6 236 58.1
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 3.9e-67 258.8 236 58.5
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 1.5e-66 256.9 234 57.7
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 4.3e-66 255.4 220 59.5
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 9.6e-66 254.2 213 62.4
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 1.6e-65 253.4 242 57.9
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 4.8e-65 251.9 232 57.8
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 4.8e-65 251.9 232 57.8
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 6.2e-65 251.5 245 54.3
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 1.8e-64 250.0 230 59.1
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 3.1e-64 249.2 233 57.1
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 4.0e-64 248.8 234 61.1
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 4.0e-64 248.8 220 57.3
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 9.0e-64 247.7 236 57.2
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 1.2e-63 247.3 214 58.4
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 2.0e-63 246.5 235 59.1
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 2.6e-63 246.1 227 55.9
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 3.4e-63 245.7 240 55.4
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 4.5e-63 245.4 212 60.4
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 4.5e-63 245.4 236 56.8
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 1.3e-62 243.8 224 58.5
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 1.3e-62 243.8 227 54.6
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.4e-61 240.4 224 58.0
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 9.3e-61 237.7 230 57.4
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 9.3e-61 237.7 278 48.6
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 9.3e-61 237.7 236 55.5
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 2.1e-60 236.5 211 59.2
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 1.8e-59 233.4 237 55.3
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.3e-59 233.0 230 56.5
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 3.9e-59 232.3 280 47.9
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 1.1e-58 230.7 226 54.0
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 3.3e-58 229.2 235 53.6
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 7.4e-58 228.0 230 55.7
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.3e-57 227.3 230 55.7
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 1.6e-57 226.9 246 51.6
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 6.4e-54 214.9 220 51.8
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 7.1e-53 211.5 235 56.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 3.5e-52 209.1 233 50.2
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 6.0e-52 208.4 176 60.8
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 9.0e-48 194.5 173 59.5
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 9.0e-48 194.5 236 47.9
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 8.4e-46 188.0 131 84.7
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 4.6e-44 182.2 232 46.1
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 8.7e-43 177.9 159 64.2
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 2.5e-42 176.4 223 48.4
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 1.6e-41 173.7 272 43.0
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 2.2e-41 173.3 231 44.2
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 1.4e-40 170.6 214 44.9
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 1.8e-40 170.2 192 47.4
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 5.3e-40 168.7 131 59.5
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 2.9e-38 162.9 138 60.1
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 1.1e-37 161.0 235 42.1
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.4e-37 160.6 230 41.7
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 5.5e-37 158.7 237 42.2
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.2e-36 157.5 232 44.4
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 2.1e-36 156.8 233 42.1
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 3.6e-36 156.0 93 75.3
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 1.9e-34 150.2 213 43.2
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 4.5e-31 139.0 95 67.4
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 6.5e-30 135.2 134 54.5
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 7.4e-26 121.7 140 51.4
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 2.2e-22 110.2 104 54.8
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 1.9e-21 107.1 140 50.0
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 8.0e-20 101.7 103 51.5
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 1.7e-17 94.0 170 37.6
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 4.1e-16 89.4 135 43.7
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 7.0e-16 88.6 216 31.9
BolC2t12268H Brassica oleracea HOM05D005662 ORTHO05D007004 3.5e-15 86.3 60 73.3
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 2.9e-14 83.2 111 42.3
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 5.0e-14 82.4 76 55.3
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 5.0e-14 82.4 97 46.4
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 8.5e-14 81.6 55 65.5
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 1.5e-13 80.9 184 32.1
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.6e-12 77.4 79 55.7
AL1G36890 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 6.7e-11 72.0 41 80.5
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 8.8e-11 71.6 133 37.6
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 7.5e-10 68.6 89 48.3
THA.LOC104821571 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 2.9e-06 56.6 59 57.6


User provided reference genes

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