Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 3.4e-206 721.5 377 100.0
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.0e-194 683.3 377 94.7
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 3.0e-194 681.8 377 93.9
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 1.5e-193 679.5 377 93.6
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 2.8e-192 675.2 377 92.8
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 1.1e-191 673.3 375 93.1
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 6.9e-191 670.6 377 93.1
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 1.5e-190 669.5 373 93.0
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 2.9e-189 665.2 378 92.1
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 8.5e-189 663.7 377 91.5
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 1.9e-188 662.5 378 92.1
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 9.4e-188 660.2 378 91.8
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 1.6e-187 659.4 378 92.1
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 1.8e-186 656.0 378 91.3
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 1.8e-186 656.0 378 91.3
Aa31LG11G1890 Aethionema arabicum HOM05D002866 ORTHO05D008706 4.2e-180 634.8 395 85.3
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 8.5e-173 610.5 377 84.1
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 4.4e-153 545.0 379 74.4
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 5.7e-153 544.7 379 74.1
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 1.7e-152 543.1 379 74.9
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 2.9e-152 542.3 379 74.1
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 1.4e-151 540.0 379 74.1
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 1.4e-151 540.0 377 72.9
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 7.8e-150 534.3 377 74.0
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 1.1e-148 530.4 378 71.2
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 1.5e-148 530.0 407 69.3
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 2.5e-148 529.3 354 75.4
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 1.6e-147 526.6 379 72.3
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 6.2e-147 524.6 379 72.0
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 1.4e-146 523.5 380 70.8
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 6.8e-146 521.2 380 71.3
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 2.6e-145 519.2 379 72.0
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 2.6e-145 519.2 380 71.1
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 4.4e-145 518.5 379 71.2
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 7.5e-145 517.7 379 70.2
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 1.3e-144 516.9 380 70.3
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 4.9e-144 515.0 380 70.3
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 1.1e-143 513.8 379 70.7
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 1.9e-143 513.1 383 69.2
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 2.4e-143 512.7 378 69.0
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 2.4e-143 512.7 380 69.5
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 4.1e-143 511.9 379 69.9
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 9.2e-143 510.8 388 70.1
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 9.2e-143 510.8 380 70.0
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 1.6e-142 510.0 379 68.6
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 1.6e-142 510.0 379 70.2
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 1.0e-141 507.3 399 67.9
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 1.3e-141 506.9 379 69.4
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 8.6e-141 504.2 383 70.0
Dinv16857 Davidia involucrata HOM05D002866 ORTHO05D000096 1.5e-140 503.4 379 69.4
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 1.5e-140 503.4 380 70.0
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 1.9e-140 503.1 380 68.4
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 1.9e-140 503.1 370 71.4
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 2.5e-140 502.7 381 68.2
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 5.6e-140 501.5 409 65.3
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 1.2e-139 500.4 403 65.8
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 1.2e-139 500.4 379 67.3
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 3.6e-139 498.8 382 67.3
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 4.7e-139 498.4 377 67.9
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 6.2e-139 498.0 379 67.0
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 8.1e-139 497.7 379 67.3
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 1.1e-138 497.3 378 66.4
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 6.8e-138 494.6 379 67.0
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 8.9e-138 494.2 377 67.6
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 5.8e-137 491.5 380 66.8
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 7.5e-137 491.1 385 68.3
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 7.5e-137 491.1 379 66.2
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 2.2e-136 489.6 379 67.3
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 1.1e-135 487.3 378 65.6
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 1.4e-135 486.9 277 92.8
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 3.2e-135 485.7 380 65.3
Lj1A977T67 Lonicera japonica HOM05D002866 ORTHO05D008706 9.2e-135 484.2 432 61.3
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.6e-134 483.4 389 65.6
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 2.1e-134 483.0 378 64.8
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 2.7e-134 482.6 434 61.5
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 3.0e-133 479.2 383 65.3
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 5.1e-133 478.4 404 63.4
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 8.6e-133 477.6 379 66.2
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 3.3e-132 475.7 380 65.3
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 3.3e-132 475.7 380 67.4
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 9.5e-132 474.2 379 64.6
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 1.1e-130 470.7 432 60.0
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 4.0e-130 468.8 378 63.5
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 3.4e-129 465.7 384 64.6
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 1.3e-128 463.8 386 63.5
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 1.3e-128 463.8 377 64.7
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 2.9e-128 462.6 382 62.3
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 4.1e-127 458.8 382 62.6
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 1.2e-126 457.2 362 68.0
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.0e-125 454.1 410 60.5
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 9.6e-124 447.6 378 63.0
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 1.6e-123 446.8 324 71.3
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 3.1e-122 442.6 379 62.3
Hund27168 Selenicereus undatus HOM05D002866 ORTHO05D008706 6.4e-120 434.9 459 53.2
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 8.4e-120 434.5 379 62.5
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 1.2e-118 430.6 388 59.5
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 1.3e-115 420.6 331 65.6
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 1.4e-114 417.2 382 58.9
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 1.7e-112 410.2 383 58.0
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 4.6e-110 402.1 418 56.2
AUR62002232 Chenopodium quinoa HOM05D002866 ORTHO05D008706 1.3e-107 394.0 382 56.0
AUR62015444 Chenopodium quinoa HOM05D002866 ORTHO05D008706 2.1e-107 393.3 382 56.5
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 6.2e-107 391.7 276 73.9
HPP92_007440 Vanilla planifolia HOM05D002866 ORTHO05D008706 2.2e-104 383.3 385 54.8
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 2.2e-96 356.7 387 53.0
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 2.5e-71 273.5 158 91.1
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 6.1e-70 268.9 158 90.5
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 6.7e-69 265.4 158 89.2
AagrBONN_evm.TU.Sc2ySwM_368.2292 Anthoceros agrestis HOM05D002866 ORTHO05D008706 1.7e-67 260.8 417 39.3
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 3.8e-64 249.6 245 55.5
Mapoly0101s0019 Marchantia polymorpha HOM05D002866 ORTHO05D008706 3.0e-61 240.0 460 36.7
AL9U10640 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.2e-57 228.0 158 79.7
CBR_g12377 Chara braunii HOM05D002866 ORTHO05D008706 6.3e-51 205.7 341 41.3
GSVIVG01032279001 Vitis vinifera HOM05D002866 ORTHO05D008706 2.4e-42 177.2 148 64.9
BcaNung07329 Brassica carinata HOM05D002866 ORTHO05D008706 1.0e-37 161.8 86 97.7
SEGI_37372 Sequoiadendron giganteum HOM05D002866 ORTHO05D008706 1.5e-36 157.9 163 49.7
GSVIVG01032275001 Vitis vinifera HOM05D002866 ORTHO05D008706 5.4e-34 149.4 129 59.7
GSVIVG01005702001 Vitis vinifera HOM05D002866 ORTHO05D008706 9.5e-31 138.7 126 58.7
Oeu017777.1 Olea europaea HOM05D002866 ORTHO05D008706 5.2e-29 132.9 108 63.9
ECA233G4879 Erigeron canadensis HOM05D000383 ORTHO05D000730 2.6e-28 130.6 102 59.8
GSVIVG01032273001 Vitis vinifera HOM05D002866 ORTHO05D008706 2.3e-24 117.5 90 66.7
Oeu031440.1 Olea europaea HOM05D002866 ORTHO05D008706 8.6e-24 115.5 103 53.4
SEGI_06793 Sequoiadendron giganteum HOM05D002866 ORTHO05D014815 2.3e-13 80.9 125 44.0
Lj9A174G23 Lonicera japonica HOM05D002866 ORTHO05D234197 6.0e-09 66.2 115 39.1
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 7.8e-09 65.9 163 31.3
GSVIVG01006058001 Vitis vinifera HOM05D002866 ORTHO05D441252 3.9e-08 63.5 39 79.5
GSVIVG01005989001 Vitis vinifera HOM05D002866 ORTHO05D440186 8.6e-08 62.4 39 76.9


User provided reference genes

Program Settings