Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 0.0e+00 2369.7 1260 100.0
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 0.0e+00 1610.9 1286 71.5
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 0.0e+00 1572.8 1295 70.7
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 0.0e+00 1508.0 1294 69.9
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 0.0e+00 1389.8 1290 65.0
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 0.0e+00 1377.8 1332 63.3
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 0.0e+00 1234.6 1359 56.6
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 0.0e+00 1138.3 1359 53.9
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 0.0e+00 1128.6 1361 53.6
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 0.0e+00 1125.2 1359 54.7
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 1.4e-240 837.4 1339 44.4
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 1.7e-172 611.3 1149 40.9
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 1.9e-75 288.9 1485 27.7
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 5.9e-69 267.3 1436 26.9
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 7.2e-67 260.4 1536 26.3
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 6.8e-65 253.8 1428 26.8
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 3.4e-64 251.5 1428 26.7
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 7.0e-62 243.8 1388 26.4
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 1.3e-60 239.6 1444 26.3
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 2.5e-59 235.3 1386 26.3
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.2e-56 226.5 1318 26.4
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 4.6e-53 214.5 503 37.4
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 1.7e-52 212.6 1360 25.8
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 6.6e-52 210.7 1312 25.8
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 2.9e-47 195.3 627 33.2
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 5.4e-46 191.0 630 32.9
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.5e-45 188.3 1278 26.2
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 8.1e-42 177.2 1418 26.0
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 2.0e-40 172.6 1267 26.4
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 8.3e-39 167.2 1438 24.2
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 8.3e-39 167.2 608 30.4
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 2.1e-37 162.5 1468 25.0
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 2.1e-37 162.5 1376 25.0
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 8.6e-36 157.1 1314 24.2
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 9.5e-35 153.7 1377 23.7
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 1.6e-34 152.9 250 45.2
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 1.8e-33 149.4 1358 23.9
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 3.1e-33 148.7 1455 24.1
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 3.1e-33 148.7 566 32.5
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 4.0e-33 148.3 1239 24.5
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 1.2e-32 146.7 1264 24.4
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 5.8e-32 144.4 222 43.2
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 5.8e-32 144.4 1440 24.4
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 9.9e-32 143.7 1347 23.3
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 2.2e-31 142.5 1255 24.6
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 5.4e-30 137.9 329 37.7
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 7.1e-30 137.5 1573 24.0
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 2.1e-29 136.0 1374 24.0
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 2.1e-29 136.0 1206 25.0
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 1.1e-27 130.2 1360 23.5
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 5.6e-27 127.9 1307 23.7
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 9.6e-27 127.1 1228 24.8
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 8.1e-26 124.0 1392 23.5
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 1.4e-25 123.2 451 31.9
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 3.1e-25 122.1 274 37.6
BcaB05g22624 Brassica carinata HOM05D006507 ORTHO05D007296 2.6e-24 119.0 118 55.9
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 9.9e-24 117.1 99 58.6
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 9.9e-24 117.1 1295 23.4
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 1.7e-23 116.3 69 75.4
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 4.9e-23 114.8 1252 23.9
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 1.4e-22 113.2 601 28.3
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 2.4e-22 112.5 75 68.0
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 2.4e-22 112.5 131 47.3
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 4.2e-22 111.7 1422 24.2
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 4.2e-22 111.7 69 72.5
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 5.4e-22 111.3 213 41.8
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 9.3e-22 110.5 70 71.4
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 1.6e-21 109.8 90 61.1
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 2.1e-21 109.4 132 46.2
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 2.1e-21 109.4 98 56.1
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 2.7e-21 109.0 98 57.1
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 6.0e-21 107.8 81 66.7
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 6.0e-21 107.8 127 44.1
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 7.8e-21 107.5 506 29.2
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 1.3e-20 106.7 132 46.2
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.9e-20 105.1 66 72.7
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 3.9e-20 105.1 232 33.6
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 5.1e-20 104.8 538 29.2
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 1.5e-19 103.2 105 49.5
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 1.9e-19 102.8 517 29.8
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 1.9e-19 102.8 1268 22.2
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 2.5e-19 102.4 74 59.5
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 3.3e-19 102.1 1348 23.3
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 9.6e-19 100.5 175 41.1
BcaB05g22625 Brassica carinata HOM05D006507 ORTHO05D007296 1.6e-18 99.8 88 62.5
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 1.6e-18 99.8 74 63.5
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 2.1e-18 99.4 177 40.1
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 6.2e-18 97.8 129 47.3
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-17 97.1 190 38.9
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 1.8e-17 96.3 91 52.7
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 2.4e-17 95.9 297 31.3
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 2.4e-17 95.9 1333 23.0
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 5.3e-17 94.7 98 51.0
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 6.9e-17 94.4 65 67.7
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 6.9e-17 94.4 65 67.7
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 6.9e-17 94.4 90 57.8
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 1.2e-16 93.6 206 35.9
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 2.6e-16 92.4 98 50.0
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 4.4e-16 91.7 1294 23.3
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 1.7e-15 89.7 255 33.7
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 2.2e-15 89.4 175 38.3
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 1.9e-14 86.3 1271 21.4
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 5.4e-14 84.7 58 67.2
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 7.1e-14 84.3 663 25.3
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 4.6e-13 81.6 1149 22.8
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 4.6e-13 81.6 140 42.1
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 7.9e-13 80.9 600 27.5
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 2.5e-11 75.9 57 57.9
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 3.3e-11 75.5 74 50.0
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 4.3e-11 75.1 120 41.7
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 2.8e-10 72.4 515 27.0
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 2.0e-08 66.2 144 36.1
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 7.6e-08 64.3 383 29.5
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 2.2e-07 62.8 58 53.4
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 2.9e-07 62.4 97 43.3
HPP92_013898 Vanilla planifolia HOM05D003265 ORTHO05D003819 3.8e-07 62.0 117 40.2
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.4e-06 60.1 210 31.9
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 4.2e-06 58.5 383 28.5
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 9.3e-06 57.4 541 27.5
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 9.3e-06 57.4 528 26.7
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 9.3e-06 57.4 140 32.1


User provided reference genes

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